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Ralstonia metallidurans CH34 (rmet0)
Gene : ABF08118.1
DDBJ      :             RNA binding S1
Swiss-Prot:             

Homologs  Archaea  7/68 : Bacteria  720/915 : Eukaryota  166/199 : Viruses  0/175   --->[See Alignment]
a.294.1a.60.2b.40.4c.55.3
:787 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   9->738 3bzcA PDBj 0.0 65.7 %
:RPS:PDB   9->738 3bzkA PDBj e-167 66.1 %
:RPS:SCOP  11->332 2oceA3  a.294.1.1 * e-107 56.6 %
:RPS:SCOP  333->481 2oceA5  c.55.3.13 * 1e-42 75.2 %
:RPS:SCOP  482->571 2oceA1  a.60.2.6 * 1e-22 81.1 %
:RPS:SCOP  572->644 2oceA2  a.60.2.6 * 1e-28 57.5 %
:RPS:SCOP  645->738 2oceA4  b.40.4.5 * 3e-22 80.9 %
:HMM:SCOP  642->738 1wi5A_ b.40.4.5 * 2.1e-25 38.1 %
:RPS:PFM   16->209 PF09371 * Tex_N 3e-60 67.9 %
:RPS:PFM   660->730 PF00575 * S1 2e-12 46.5 %
:HMM:PFM   16->210 PF09371 * Tex_N 6.7e-82 63.9 191/193  
:HMM:PFM   660->732 PF00575 * S1 2.1e-22 43.8 73/74  
:HMM:PFM   505->557 PF03934 * GspK 2.3e-06 23.1 52/280  
:HMM:PFM   338->365 PF04312 * DUF460 0.00012 50.0 26/138  
:BLT:SWISS 15->748 YHGF_ECOLI 0.0 63.8 %
:COIL
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABF08118.1 GT:GENE ABF08118.1 GT:PRODUCT RNA binding S1 GT:DATABASE GIB00349CH01 GT:ORG rmet0 GB:ACCESSION GIB00349CH01 GB:LOCATION complement(1353160..1355523) GB:FROM 1353160 GB:TO 1355523 GB:DIRECTION - GB:PRODUCT RNA binding S1 GB:PROTEIN_ID ABF08118.1 GB:DB_XREF GI:93354029 InterPro:IPR003029 InterPro:IPR006641 LENGTH 787 SQ:AASEQ MSNLPASVLQKIVSLIAAELSVQPRQVAAAVNLLDEGATVPFIARYRKEVTGNLDDTQLRTLEERLLYLRDMEDRRATILASIEEQGKLTDELRAAIEAAETKQTLEDLYLPYKPRRRTRAQIARECGLEPLAQALLADPTLDPQAEAAKYVNGNPTADGGVPDVKAALDGARDILSEQFGETAELLGKLREHLWSNGVVTSSVVEGKETAEEEKFRDYYQYSETIRTVPSHRALALFRGRNAGVLMVKLGLGEEQDAMVPHPCEGMIARHVGIQNQNRPADKWLADVCRWSWRVKVQPHLETELLTQLRETAEGEAIKVFGRNLHELLLAAPAGPKSVMGVDPGIRTGCKIAVVDTTGKLLETATIYPHEPRRDWNGSLATLARLAKQHNVALCSIGNGTASRETDKLVQDLMKGAPELKLTKIVVSEAGASVYSASELAAKEFPELDVSLRGAVSIARRLQDPLAELVKIDPKSIGVGQYQHDVNQRELARALDAVVEDCVNAVGVDVNTASAPLLARVSGLNSVLARNIVEYRDANGAFSNRDALKKVPRLGDKTFEQAAGFLRVNDGDNPLDRSSVHPEAYPVVQRILDHIKKGLPDVMGNRDALRGLSAQQFADDTFGLPTVRDILSELEKPGRDPRPEFKTATFQDGVEDVKDLQPGMVLEGVVTNVAAFGAFVDIGVHQDGLVHISALSTKFVKDAHEVVKAGQIVKVKVMEVDVKRNRIGLTMRLDDEPGQATARAGGADRSNDRGGQRNGSGKGSNGGNRREAVQQGAMAAAFAKLKR GT:EXON 1|1-787:0| BL:SWS:NREP 1 BL:SWS:REP 15->748|YHGF_ECOLI|0.0|63.8|727/773| COIL:NAA 9 COIL:NSEG 1 COIL:REGION 78->86| SEG 59->70|lrtleerllylr| SEG 301->314|letelltqlretae| SEG 753->770|rggqrngsgkgsnggnrr| SEG 772->783|avqqgamaaafa| BL:PDB:NREP 1 BL:PDB:REP 9->738|3bzcA|0.0|65.7|724/730| RP:PDB:NREP 1 RP:PDB:REP 9->738|3bzkA|e-167|66.1|722/728| RP:PFM:NREP 2 RP:PFM:REP 16->209|PF09371|3e-60|67.9|190/193|Tex_N| RP:PFM:REP 660->730|PF00575|2e-12|46.5|71/74|S1| HM:PFM:NREP 4 HM:PFM:REP 16->210|PF09371|6.7e-82|63.9|191/193|Tex_N| HM:PFM:REP 660->732|PF00575|2.1e-22|43.8|73/74|S1| HM:PFM:REP 505->557|PF03934|2.3e-06|23.1|52/280|GspK| HM:PFM:REP 338->365|PF04312|0.00012|50.0|26/138|DUF460| GO:PFM:NREP 1 GO:PFM GO:0003723|"GO:RNA binding"|PF00575|IPR003029| RP:SCP:NREP 5 RP:SCP:REP 11->332|2oceA3|e-107|56.6|316/323|a.294.1.1| RP:SCP:REP 333->481|2oceA5|1e-42|75.2|149/149|c.55.3.13| RP:SCP:REP 482->571|2oceA1|1e-22|81.1|90/90|a.60.2.6| RP:SCP:REP 572->644|2oceA2|1e-28|57.5|73/73|a.60.2.6| RP:SCP:REP 645->738|2oceA4|3e-22|80.9|94/94|b.40.4.5| HM:SCP:REP 642->738|1wi5A_|2.1e-25|38.1|97/0|b.40.4.5|1/1|Nucleic acid-binding proteins| OP:NHOMO 1624 OP:NHOMOORG 893 OP:PATTERN --------------------------------11----11111------------------------- 111-12211112121------2--12-----1222211111112-1---11-222--111111-12211111111111-12-------3222-1111--1111-1111-1--------------1---------1-3223311-41111111--------------2111-1-------1----1------144333333333333333343334333434433333333322222222222222222111124131221311133223333322-22222222222222222222222222222222222222122221112-1211111111121121221111144123111-11131231-222--1111-422211-111222222112222211221121222-22222222221-2222222222232221-112323312211111111-1111211------------11--1111111-1-----2222122222222222322222222222222222222212222222222333232222211222222222232222222111222123331121111111111121-11------------11111111--11112232122233222222222222232222221-2232121122222222222222222222-2222222222222222222222223232222222222222222222222222-2222222222221-121111122222322222233222312211322232223332222222222222222222---------12222222222222222333333333333--1---------------111------11--1----------1111-1111------1- --------211---122111111111111111111-11111111111111111111111211-----1--111-111-21---1111--1312111111111-211--5-32323212212222422412B2121322112122212212211212232231132623-2B4131-112A122-171231223131111 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 737 STR:RPRED 93.6 SQ:SECSTR ########cHHHHHHHHHHHHTcTTccHHHHHHHHHTccHHHHHHHcHHHHTcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTcccHHHHHHHHHcccHHHHHHHHGGGccccccHHHHHHHTTTHHHHHHHHHcTTccHHHHHHTTccHHHHGGGTcccHHHHHHHHHHHHHHHHHTcHHHHHHHHHHHHHHcEEEEEEcTTcTGTTTGGGGGGTEEEEEGGGccHHHHHHHHHHHHTTcEEEEEEcccccccTcccHHHHHHHHHTTccccccTTHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTccccccccEEEEEcccTTcEEEEEEcTTccEEEEEEEcccTTTccHHHHHHHHHHHHHHTTccEEEEEccTTHHHHHHHHHHHHHHcGGGccEEEEEccTTHHHHHTcHHHHHHcTTccHHHHHHHHHHHHHHcHHHHHTTccGGGccccTTTTTccHHHHHHHHHHHHHHHHHHHcEETTTccHHHHTTcTTccHHHHHHHHHHHHHHccccccGGGGGcTTccHHHHHHHHTTEEcTTcccGGGGccccGGGHHHHHHHHHHTTccHHHHTTcHHHHHHccGGGTccccccHHHHHHHHHHHHcTTccccccccHHHHHHTcccGGGccTTcEEEEEEEEEETTEEEEEccccccEEEEGGGGcccccccHHHHccTTcEEEEEEEEEETTTTEEEEEccTTccccHHHHHHH########################################## DISOP:02AL 1-7,207-210,483-490,731-772| PSIPRED cccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHccccccEEEEEcHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHcccHHHHHHHHHccccccccHHHHHHHcccHHHHHHHHHcccccHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHEEEEEEEEEcccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHcccccEEEEEEEccccccccccHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEcccccccEEEEEEcccccEEEEEEEcccccHHHHHHHHHHHHHHHHHcccEEEEEEcccccHHHHHHHHHHHHHcccccccEEEEccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccEEEEcccccEEEcccccccccHHHHHHHccHHHHHcccccccccccccHHHHHHcccccHHHHHHHHHHHHHHcccccHHHHHHcccccHHHHHHHccHHHccccccccccccccccccHHHHHHHHHccccHHHHcccHHHHHcccHHHHHHHHHcccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcccccccEEEEEEEEcccccEEEEEccccEEEEEEEEccccccccHHHHcccccEEEEEEEEEEccccEEEEEEEEcccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcc //