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Ralstonia metallidurans CH34 (rmet0)
Gene : ABF08127.1
DDBJ      :             phage integrase
Swiss-Prot:             

Homologs  Archaea  28/68 : Bacteria  750/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
a.60.9d.163.1
:336 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   119->298 1a0pA PDBj 5e-18 34.3 %
:RPS:PDB   12->307 2a3vA PDBj 2e-27 21.1 %
:RPS:SCOP  14->122 1crxA1  a.60.9.1 * 2e-09 14.7 %
:RPS:SCOP  122->309 1aihA  d.163.1.1 * 2e-25 25.0 %
:HMM:SCOP  7->123 4crxA1 a.60.9.1 * 4.7e-05 22.7 %
:HMM:SCOP  119->312 4crxA2 d.163.1.1 * 2.7e-48 34.5 %
:RPS:PFM   14->98 PF02899 * Phage_integr_N 1e-08 40.5 %
:RPS:PFM   128->299 PF00589 * Phage_integrase 8e-20 39.2 %
:HMM:PFM   125->297 PF00589 * Phage_integrase 5.3e-34 34.1 164/173  
:HMM:PFM   14->95 PF02899 * Phage_integr_N 7.6e-12 34.2 76/84  
:BLT:SWISS 2->336 Y4RC_RHISN 9e-44 33.8 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABF08127.1 GT:GENE ABF08127.1 GT:PRODUCT phage integrase GT:DATABASE GIB00349CH01 GT:ORG rmet0 GB:ACCESSION GIB00349CH01 GB:LOCATION 1364828..1365838 GB:FROM 1364828 GB:TO 1365838 GB:DIRECTION + GB:PRODUCT phage integrase GB:PROTEIN_ID ABF08127.1 GB:DB_XREF GI:93354038 InterPro:IPR002104 InterPro:IPR004107 LENGTH 336 SQ:AASEQ MKDFNLPSIIHRYFLEYLPRHKGLQSSSIRSYRDSLRLFLIFVAGTHRLGVSELVLEHLDYPAVQAFLHSMEADRGNAISTRNQRLAALHVFYEYVGRTVPEMLPTSAKVAAIPMKRCPRPEMTFLGRDEVQAMFACIPAQHRLSSRDRALLMLLYNTGARVSEVAHLKVEQLDLRSPARVRLLGKGSKWRTCPLWNQTAKALQAMLDERGTNLPPESPVFVGASQAPMTRFGIYKRIRHYATLWEASGHTASAAKVTPHVFRHTTAVHLLESGVEVNVIRGWLGHVNLETTNRYAEITIRMKAEALKLCDPIVAGVPRKPAWKDDAAMMAWLSSL GT:EXON 1|1-336:0| BL:SWS:NREP 1 BL:SWS:REP 2->336|Y4RC_RHISN|9e-44|33.8|328/332| BL:PDB:NREP 1 BL:PDB:REP 119->298|1a0pA|5e-18|34.3|169/271| RP:PDB:NREP 1 RP:PDB:REP 12->307|2a3vA|2e-27|21.1|275/313| RP:PFM:NREP 2 RP:PFM:REP 14->98|PF02899|1e-08|40.5|79/84|Phage_integr_N| RP:PFM:REP 128->299|PF00589|8e-20|39.2|158/168|Phage_integrase| HM:PFM:NREP 2 HM:PFM:REP 125->297|PF00589|5.3e-34|34.1|164/173|Phage_integrase| HM:PFM:REP 14->95|PF02899|7.6e-12|34.2|76/84|Phage_integr_N| GO:PFM:NREP 5 GO:PFM GO:0003677|"GO:DNA binding"|PF02899|IPR004107| GO:PFM GO:0015074|"GO:DNA integration"|PF02899|IPR004107| GO:PFM GO:0003677|"GO:DNA binding"|PF00589|IPR002104| GO:PFM GO:0006310|"GO:DNA recombination"|PF00589|IPR002104| GO:PFM GO:0015074|"GO:DNA integration"|PF00589|IPR002104| RP:SCP:NREP 2 RP:SCP:REP 14->122|1crxA1|2e-09|14.7|102/110|a.60.9.1| RP:SCP:REP 122->309|1aihA|2e-25|25.0|160/170|d.163.1.1| HM:SCP:REP 7->123|4crxA1|4.7e-05|22.7|110/0|a.60.9.1|1/1|lambda integrase-like, N-terminal domain| HM:SCP:REP 119->312|4crxA2|2.7e-48|34.5|194/212|d.163.1.1|1/1|DNA breaking-rejoining enzymes| OP:NHOMO 1908 OP:NHOMOORG 778 OP:PATTERN --1-11----------2---------------111111-3343-1112-1-----111111111---- 21A1222222222222222-23223222222262222373113312112111222222221242143---222223652212----11333222222--327372322222222222222222222222222223212211235226171---1---------1--1211--------------1---2223322222222224433243233222227577232222232322222222222222222222222222221222221122222222111----------1--12111111-----------------------3513353333333223-442222122-221755438734143222242-122C922222222223222112312133333333333-22111-2-2D21211522GC2256312227211111321333333335222132311112111222222112222222222122-212222111623323212222323C2232222222296222233331113733122222222122222222249112262-222234222222322232213223222--------------------2-1-29825225--22222243222222322322223--24323------32442224445454624-422454444235433333233282DH22222242222232225242233222-222222222322---2---------222222222222222122223233422212222232222222222234622222222222236222222222222222222222222--32332222--------222---------1---------------11-1112111262 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 312 STR:RPRED 92.9 SQ:SECSTR ###########HHHHHHHHHHTTccHHHHHHHHHHHHHHHTTccccccHHHTTccGGGccHHHHHHHHHHHHTTTcccHHHHHHHHHHHHHHHHHTccccccTTccHHHHHHcccccccccccccccHHHHHHHTTcccHccHHHHHHHHHHHHHHHccccHHHHHTccGGGEETTTTEEEEEEETTTEEEEEEccGGGHHHHHHHHHHHHHHHHHHTccccccccEEETTTTEEEcccccHHHHHHHHTTcccccccHHHHHHHHHHHHHHTTccHHHHHHHHTcccHHHHGGGcccccccHHHHcHHHTTcTTcccccGGG############# DISOP:02AL 1-1,313-327| PSIPRED cccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHccccccccccHHHccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHccccccHHHHcccccccccccccccccHHHHHHHHHHccccccccHHHHHHHHHHHHHcccHHHHHcccHHHEEccccEEEEEccccccEEEEEccHHHHHHHHHHHHHHcccccccccEEEccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHccccHHHHHHHHccccHHHHHHHHHccHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHc //