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Ralstonia metallidurans CH34 (rmet0)
Gene : ABF08136.1
DDBJ      :             Integrase, catalytic region
Swiss-Prot:             

Homologs  Archaea  1/68 : Bacteria  134/915 : Eukaryota  4/199 : Viruses  0/175   --->[See Alignment]
a.4.1a.6.1c.55.3
:333 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   132->283 2itgA PDBj 9e-07 26.4 %
:RPS:PDB   135->307 1biuA PDBj 4e-13 14.1 %
:RPS:SCOP  26->91 1q05A  a.6.1.3 * 3e-04 15.4 %
:RPS:SCOP  135->296 1b92A  c.55.3.2 * 5e-12 16.8 %
:HMM:SCOP  24->110 1pdnC_ a.4.1.5 * 1.6e-07 32.2 %
:HMM:SCOP  125->302 1c0mA2 c.55.3.2 * 6.1e-39 35.8 %
:RPS:PFM   151->257 PF00665 * rve 8e-16 47.8 %
:HMM:PFM   134->256 PF00665 * rve 4.2e-29 34.9 109/120  
:HMM:PFM   26->67 PF01527 * Transposase_8 1.9e-05 23.1 39/76  
:HMM:PFM   69->186 PF03050 * Transposase_25 0.00027 17.9 112/178  
:BLT:SWISS 127->294 INTG_SPV1C 4e-11 25.7 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABF08136.1 GT:GENE ABF08136.1 GT:PRODUCT Integrase, catalytic region GT:DATABASE GIB00349CH01 GT:ORG rmet0 GB:ACCESSION GIB00349CH01 GB:LOCATION complement(1373579..1374580) GB:FROM 1373579 GB:TO 1374580 GB:DIRECTION - GB:PRODUCT Integrase, catalytic region GB:PROTEIN_ID ABF08136.1 GB:DB_XREF GI:93354047 InterPro:IPR001584 LENGTH 333 SQ:AASEQ MHLRLHKNATTTPRIRAEIQVSKEPMRVLAQRFGVSVSTIARWKKRASVHDASHTPHRLQTTLTPAQESIVLVLRKSLGLSLDDLLAVVREFIHPTVSRAALHRMLKRHGVSAREALSVDRPRTKPFKAYEPGFVHIDVKYLPQMADETTRRYLFVAIDRATRWVFVRVYASKSATNARRFLKELHKAAAFRIRTILTDNGKEFTDRFITRGERTPTGRHQFDQLCEELGIEHRLTRPKHPQTNGMVERFNGRIADILRTHHFHSGEELEATILRYVWLYNHQLPQKALGHVSPIQAMKQWQRSHPELFNRRVTNQPGHDNYALHRPRRNVMG GT:EXON 1|1-333:0| BL:SWS:NREP 1 BL:SWS:REP 127->294|INTG_SPV1C|4e-11|25.7|167/362| BL:PDB:NREP 1 BL:PDB:REP 132->283|2itgA|9e-07|26.4|129/160| RP:PDB:NREP 1 RP:PDB:REP 135->307|1biuA|4e-13|14.1|142/147| RP:PFM:NREP 1 RP:PFM:REP 151->257|PF00665|8e-16|47.8|92/116|rve| HM:PFM:NREP 3 HM:PFM:REP 134->256|PF00665|4.2e-29|34.9|109/120|rve| HM:PFM:REP 26->67|PF01527|1.9e-05|23.1|39/76|Transposase_8| HM:PFM:REP 69->186|PF03050|0.00027|17.9|112/178|Transposase_25| GO:PFM:NREP 2 GO:PFM GO:0003677|"GO:DNA binding"|PF00665|IPR001584| GO:PFM GO:0015074|"GO:DNA integration"|PF00665|IPR001584| RP:SCP:NREP 2 RP:SCP:REP 26->91|1q05A|3e-04|15.4|65/122|a.6.1.3| RP:SCP:REP 135->296|1b92A|5e-12|16.8|131/144|c.55.3.2| HM:SCP:REP 24->110|1pdnC_|1.6e-07|32.2|87/0|a.4.1.5|1/1|Homeodomain-like| HM:SCP:REP 125->302|1c0mA2|6.1e-39|35.8|159/0|c.55.3.2|1/1|Ribonuclease H-like| OP:NHOMO 757 OP:NHOMOORG 139 OP:PATTERN -----------------------1-------------------------------------------- B----------5-2-5A-------41------23-2--1--------3--P-----1----------29---------------1-D2--------4----------3------------------1--------------------------------------H--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------2---------------1--------1-1---F-1-----2122-2112--3753-4---1-----12------17-------165----76877887-K7S---1-------------------------1-1--7--6---9*--12-3------------------2---4-------J1-1-1--7--------3-------GO------1-2------22-----3---C--------------------------------4----1----1---11111111111111111111-------------1----1-----------------1----------------1---1----------------1---------1------------------------1----------------11-----------2---1----------------------------12112---1-55----1-33------1-------------------------------------------------------- ---------------------------------------------------------------------------------------------------------I--------------------------------------------------------------------------------222---------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 199 STR:RPRED 59.8 SQ:SECSTR ###########################################################################################################################cccTcTTcTTEEEEEEEEETGGTGGTTTEEEEEEEETTTTEEEEEEEccccHHHHHHHHHHHHHHHHccccEEEccccTHccccEEEEcccHHHHcHHHHHHHHHHTcEEEEccHHHHHHHHHHHHHHHHHGGGcccHHHHcccHHHHHHHHHHHHHHHHccGGGcccccHHHHHHHHHHHHccTccccEEEEcTTccE########### DISOP:02AL 1-1,3-3,58-58,112-122,330-334| PSIPRED ccccccccccccHHHHHHHHHccccHHHHHHHHcccHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHccccccHHHHHHHHHHHccccccccccccccccccccccccEEEEEEEEEcccccccccEEEEEEEEccccEEEEEEEccccHHHHHHHHHHHHHHcccccEEEEEcccccHHHHHHHccccccccccHHHHHHHHcccEEEEcccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccccccccccHHHHHccccccccccccccccccccccccccccccccccc //