[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Ralstonia metallidurans CH34 (rmet0)
Gene : ABF08149.1
DDBJ      :             Integrase, catalytic region
Swiss-Prot:             

Homologs  Archaea  2/68 : Bacteria  176/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
a.4.1a.4.5c.55.3
:336 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:RPS:PDB   1->47 3c57B PDBj 1e-05 24.4 %
:RPS:SCOP  1->40 1tc3C  a.4.1.2 * 3e-06 22.5 %
:RPS:SCOP  13->63 1v4rA1  a.4.5.6 * 3e-04 17.6 %
:HMM:SCOP  2->35 1gdtA1 a.4.1.2 * 0.00076 41.2 %
:HMM:SCOP  104->289 1c0mA2 c.55.3.2 * 6.1e-18 24.6 %
:RPS:PFM   2->31 PF02796 * HTH_7 2e-04 53.3 %
:HMM:PFM   110->235 PF00665 * rve 3.4e-24 33.6 113/120  
:HMM:PFM   9->31 PF08281 * Sigma70_r4_2 2.1e-06 43.5 23/54  
:BLT:SWISS 3->279 TRA6_BACST 1e-49 41.7 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABF08149.1 GT:GENE ABF08149.1 GT:PRODUCT Integrase, catalytic region GT:DATABASE GIB00349CH01 GT:ORG rmet0 GB:ACCESSION GIB00349CH01 GB:LOCATION complement(1385440..1386450) GB:FROM 1385440 GB:TO 1386450 GB:DIRECTION - GB:PRODUCT Integrase, catalytic region GB:PROTEIN_ID ABF08149.1 GB:DB_XREF GI:93354060 InterPro:IPR001584 InterPro:IPR007101 LENGTH 336 SQ:AASEQ MEIRVLARQGLGIREISRELGLSRNTVRKYLRSCAEQDRAPRSGRTQKLDPFKTYLHDRVRAAHPAWLPATALLIEIRAMGYDGGLTRLRVYLRSLKSIKAPEPLVRFETDPGQQMQVDWIVFRRGKLPLSAFVATLGYSRASYVEFVTDERLPTLLGCHERAFDFFGGVPREVLYDNVKTVVIGRDAYGPGLHRYQPAFLDFAKHHGFVPRLCKPYRAKTKGKVERFNGYLRRSFYNPLASRLAQDRLSLDATTANAEVVRWLRDVANVRIHGTTGQSPLERLLLEQPKLQQLPEPWRANLPSASVPTMPPPSRFDDTPLQHQLSVYQALLTEAR GT:EXON 1|1-336:0| BL:SWS:NREP 1 BL:SWS:REP 3->279|TRA6_BACST|1e-49|41.7|264/400| SEG 280->297|plerllleqpklqqlpep| RP:PDB:NREP 1 RP:PDB:REP 1->47|3c57B|1e-05|24.4|45/49| RP:PFM:NREP 1 RP:PFM:REP 2->31|PF02796|2e-04|53.3|30/44|HTH_7| HM:PFM:NREP 2 HM:PFM:REP 110->235|PF00665|3.4e-24|33.6|113/120|rve| HM:PFM:REP 9->31|PF08281|2.1e-06|43.5|23/54|Sigma70_r4_2| GO:PFM:NREP 3 GO:PFM GO:0000150|"GO:recombinase activity"|PF02796|IPR006120| GO:PFM GO:0003677|"GO:DNA binding"|PF02796|IPR006120| GO:PFM GO:0006310|"GO:DNA recombination"|PF02796|IPR006120| RP:SCP:NREP 2 RP:SCP:REP 1->40|1tc3C|3e-06|22.5|40/51|a.4.1.2| RP:SCP:REP 13->63|1v4rA1|3e-04|17.6|51/100|a.4.5.6| HM:SCP:REP 2->35|1gdtA1|0.00076|41.2|34/0|a.4.1.2|1/1|Homeodomain-like| HM:SCP:REP 104->289|1c0mA2|6.1e-18|24.6|167/0|c.55.3.2|1/1|Ribonuclease H-like| OP:NHOMO 1000 OP:NHOMOORG 178 OP:PATTERN --------------------------------------------------M-3--------------- --321----------4-----2---21-11--3-1--------1-------1--1-1---7-----7511-3----9----1---------1------------------------------------2P----------------1-------------------------------------1------11-----------1---6-1---------2----1----------------------------------------22----------7--------------------------------------------5A1-1--------------------5--5----11--26--24--19---1--7--4-------8-2711-2-------------1-239---1------1152-1---41-----1---3-----222222227A5-----------------------C------------1B4-----1-455--A----7751-----1-E3---3--1-4-3-9--12-4--3F-1--------------F----3--4-2-2------13A822-43--24312----------------------------C2-P------------3-1--1-----------2------------------1-3C-9------111-12-----------3----------1---------111223--O---mba6*WnS-7-----------3-1--4---------------------------5---1----------5O5-----------------------------------------1--------------------------------------------C1---------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 110 STR:RPRED 32.7 SQ:SECSTR HHHHHHHHTTccHHHHHHHHTccHHHHHHHHHHHHHHHTcETcccccEcccccccccHHHHHHTHHHTTccEEcHHHHHEEEHHHTcTTcEEEEEEEEEEETTEEEEEEE################################################################################################################################################################################################################################## DISOP:02AL 6-7,36-49,301-308,336-337| PSIPRED cHHHHHHHccccHHHHHHHHcccHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHccccccHHHHHHHHHHccccHHHHHHHHHHHHccccccccEEEEccccccEEEEEEEEccccEEEEEEEEEEEccccEEEEEEEccccHHHHHHHHHHHHHHHccccEEEEEccccEEEEEccccccccccHHHHHHHHHHHcccEEEEcccccccccccEEHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHccccccHHHHHcHHHHHHHccHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHHcc //