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Ralstonia metallidurans CH34 (rmet0)
Gene : ABF08157.1
DDBJ      :             phage integrase
Swiss-Prot:             

Homologs  Archaea  1/68 : Bacteria  129/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
d.163.1
:315 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   134->189 1a0pA PDBj 2e-04 38.2 %
:RPS:PDB   28->307 1drgA PDBj 5e-17 11.0 %
:RPS:SCOP  97->307 1crxA2  d.163.1.1 * 4e-16 13.7 %
:HMM:SCOP  103->304 1a0pA2 d.163.1.1 * 2.5e-26 33.7 %
:RPS:PFM   134->291 PF00589 * Phage_integrase 8e-08 39.4 %
:HMM:PFM   106->294 PF00589 * Phage_integrase 1.5e-20 32.3 164/173  
:HMM:PFM   29->77 PF02899 * Phage_integr_N 0.00012 26.5 49/84  
:BLT:SWISS 1->308 Y4RB_RHISN 4e-59 40.5 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABF08157.1 GT:GENE ABF08157.1 GT:PRODUCT phage integrase GT:DATABASE GIB00349CH01 GT:ORG rmet0 GB:ACCESSION GIB00349CH01 GB:LOCATION 1394698..1395645 GB:FROM 1394698 GB:TO 1395645 GB:DIRECTION + GB:PRODUCT phage integrase GB:PROTEIN_ID ABF08157.1 GB:DB_XREF GI:93354068 InterPro:IPR002104 LENGTH 315 SQ:AASEQ MTAIHESLAQYVAVRRALGASFYEPALALGHFVDLLEREGAEFITTDLALRWATTPELVERATWGRRLSQVRGFARWMNVIDSRNQIPPAGLLSARRRRNAPHIYTEQEIDRLMTRASQLRSRTGIRALTYSTLIGLLVATGLRPGEALRLDRSDVDLVSGILSIRESKFGKSRFVPVAESSRVALEHYARKRDQLCPVRLSEAFLVSEHGKRLKAGTARSMFVRMSRAVGLRSATEGGRDGYGPRLQDFRHSFATGRLVEWYRAGLDVSRELPKLAAYLGHVNIGLTYWYIESVPELLELAAAYLDKDCPGERT GT:EXON 1|1-315:0| BL:SWS:NREP 1 BL:SWS:REP 1->308|Y4RB_RHISN|4e-59|40.5|304/314| BL:PDB:NREP 1 BL:PDB:REP 134->189|1a0pA|2e-04|38.2|55/271| RP:PDB:NREP 1 RP:PDB:REP 28->307|1drgA|5e-17|11.0|272/313| RP:PFM:NREP 1 RP:PFM:REP 134->291|PF00589|8e-08|39.4|137/168|Phage_integrase| HM:PFM:NREP 2 HM:PFM:REP 106->294|PF00589|1.5e-20|32.3|164/173|Phage_integrase| HM:PFM:REP 29->77|PF02899|0.00012|26.5|49/84|Phage_integr_N| GO:PFM:NREP 3 GO:PFM GO:0003677|"GO:DNA binding"|PF00589|IPR002104| GO:PFM GO:0006310|"GO:DNA recombination"|PF00589|IPR002104| GO:PFM GO:0015074|"GO:DNA integration"|PF00589|IPR002104| RP:SCP:NREP 1 RP:SCP:REP 97->307|1crxA2|4e-16|13.7|197/212|d.163.1.1| HM:SCP:REP 103->304|1a0pA2|2.5e-26|33.7|181/182|d.163.1.1|1/1|DNA breaking-rejoining enzymes| OP:NHOMO 196 OP:NHOMOORG 130 OP:PATTERN ----------------------------------------------------------1--------- --4----1111--1------------------1-----12---1--------1---------1----1---1---1431-11------1111-----------2-------1111111--------1----------11------1---------------------------------------------111-----------------1111---11111-------------------------111-----------------------------------------------------------------------------1-------------------------411132-2-1---------1-23--------112------1----------------1----1--61----2--24--32-----3------1----------2----------------------------------------1-----4-----------1115-----------71-----2----1-1-----1------1111111---6----2--1-1--1-------1---1--11111---------------------------33----1-----------------------------1----------------------------------------------1---3---------------------------------------------------------------------------------------------------1-1-------------------------------111------1-111111-----------------------------------------------4- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 312 STR:RPRED 99.0 SQ:SECSTR #HHHHHHHHHHHHTGGGccHHHHHHHHHHHHHHHHHHHTTccTTcHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHTTcccTTccHHHHHHHHHHHHHHHHHTccccccHHHHHHHHHHTTcccHHHHHHHHHHHHHHHHcccHHHHTTccGGGEEEcGGGcEEEEcccEEEccHHHHHHHHHHHHHHcGGGcTTccccccccTTccccccccccccHHHHHHHHHHHHHHccccccccTTccccTTHHHHHHHHHHHHHHHHTTccTTccHHHHHHHHTcccHHHHHHHTTTccccccHHHHHHTTTcccc## DISOP:02AL 312-316| PSIPRED ccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHccccccccHHHcccccccccccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHcccHHHHHcccHHHccccccEEEEEcccccccEEEEccHHHHHHHHHHHHHHHHHccccccccEEEccccccccHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHccccHHHHHHHHHccHHHHHHHHHHHHHHcccccc //