[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Ralstonia metallidurans CH34 (rmet0)
Gene : ABF08412.1
DDBJ      :             Integrase, catalytic region
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  205/915 : Eukaryota  1/199 : Viruses  1/175   --->[See Alignment]
a.4.1c.55.3d.3.1
:342 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:RPS:PDB   237->332 1bisB PDBj 4e-07 16.7 %
:RPS:SCOP  5->120 1pdnC  a.4.1.5 * 2e-04 19.0 %
:RPS:SCOP  268->342 2btwA1  d.3.1.14 * 4e-04 12.0 %
:HMM:SCOP  176->334 1c6vA_ c.55.3.2 * 2.6e-21 26.5 %
:HMM:PFM   179->289 PF00665 * rve 3.2e-18 23.1 108/120  
:HMM:PFM   7->43 PF04545 * Sigma70_r4 0.00029 24.3 37/50  
:BLT:SWISS 1->332 TRA8_RALME 2e-97 54.1 %
:PROS 275->291|PS01043|TRANSPOSASE_IS30
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABF08412.1 GT:GENE ABF08412.1 GT:PRODUCT Integrase, catalytic region GT:DATABASE GIB00349CH01 GT:ORG rmet0 GB:ACCESSION GIB00349CH01 GB:LOCATION complement(1650747..1651775) GB:FROM 1650747 GB:TO 1651775 GB:DIRECTION - GB:PRODUCT Integrase, catalytic region GB:PROTEIN_ID ABF08412.1 GB:DB_XREF GI:93354323 InterPro:IPR001584 InterPro:IPR001598 LENGTH 342 SQ:AASEQ MTKKNYQQLSETERHAIALGLQQKQSLSAIARALGRDKSTISRECNRNAGGKGYASKFAQQRSDNRKRQARPSPKLHRQGPLFPLVCDYLRHKWSPQQIANELQRLHPQDRRLQASHESIYTCIYAQPRGELKKELVSCLRMAHAKRWPRSRGKDRRKETQDLLSIHVRAPEIEDRQLPGHWEGDLIKGKANASAIGTLVERTTRLVVLVKLPHPNPATAAHVLQAFSDKLKTIAQPMRQTLTYDRGSEMAEHRQLSENTGMKVYFCDPYSPWQRGSNENTNGLLRQYFPKGTDLSGYSQEQLDAVADELNGRPRMTLGWRKPIEVYAEHLARLAQQPDLVH GT:EXON 1|1-342:0| BL:SWS:NREP 1 BL:SWS:REP 1->332|TRA8_RALME|2e-97|54.1|329/339| PROS 275->291|PS01043|TRANSPOSASE_IS30|PDOC00801| SEG 198->212|tlverttrlvvlvkl| RP:PDB:NREP 1 RP:PDB:REP 237->332|1bisB|4e-07|16.7|96/154| HM:PFM:NREP 2 HM:PFM:REP 179->289|PF00665|3.2e-18|23.1|108/120|rve| HM:PFM:REP 7->43|PF04545|0.00029|24.3|37/50|Sigma70_r4| RP:SCP:NREP 2 RP:SCP:REP 5->120|1pdnC|2e-04|19.0|105/123|a.4.1.5| RP:SCP:REP 268->342|2btwA1|4e-04|12.0|75/210|d.3.1.14| HM:SCP:REP 176->334|1c6vA_|2.6e-21|26.5|151/0|c.55.3.2|1/1|Ribonuclease H-like| OP:NHOMO 1047 OP:NHOMOORG 207 OP:PATTERN -------------------------------------------------------------------- ------1-3517-4--211-12---211111-2636-188-134---4--8F-1-12----14---D2-------A7-----1------2--------------------------------------------------------------8-------------1-----------------------------------1-------3-----------1B---------5---6-2-21---22----3--N4sL3J-861-85613-1243----1-J8-----1--11--1-1--B21C-1132151----------------------2---------E--S-----------------382----1-1111-----------------------------1--1E----------111--13-133------1--2--1-------------------------------------1------------2-------3-1-6----------1--1--1i2--1D-22-14--212-13--24---------E6A7---2--2----------------------------2-------------------------------5--------6-R1228--2---------------2--------------32213---1--243--1---321111311----1-26-------------------------------------------55--4---1-----6----------1-1---8---------------2-----13---k---------A--1------1-71------1nhp--------22------------3------------3-------6-2----------------- --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1---------- ------------------------------------------------------------------------------------------------------------1------------------------------------------------------------------ STR:NPRED 158 STR:RPRED 46.2 SQ:SECSTR ##################################################################################################################################################################################TGEEEEEEEEETEEEEEETEEEEEEEETTTTEEEEEEEccccHHHHHHHHHHHHHHccccEEEccccTTTccHHHHHHHHHHTcEEEccccccccHHHHHHHHHHHHHHHHHHHGGGcccHHHHHHHHHHHHHHccGGGcccccHHHHHHHHHHHHHH###### DISOP:02AL 1-4,66-76,141-159,338-343| PSIPRED ccccccccccHHHHHHHHHHHHccccHHHHHHHHccccHHHHHHHHHccccccccHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHccccHHHHHHHHHHHcccccccEEcHHHHHHHHHHccccHHHHHHHHHHHHcccccccccccccccccccccccHHHccccHHHHHcccccccEEEEEccccEEEEEEEEcccEEEEEEEEccccHHHHHHHHHHHHHHHHHHcccccEEEEEcccHHHHHHHHHHHHHccEEEEcccccccccccHHHHHHHHHHHHHccccHHHccHHHHHHHHHHHHccHHHHHccccHHHHHHHHHHHHcccccccc //