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Ralstonia metallidurans CH34 (rmet0)
Gene : ABF08429.1
DDBJ      :             transcriptional regulator, LysR family
Swiss-Prot:             

Homologs  Archaea  1/68 : Bacteria  637/915 : Eukaryota  7/199 : Viruses  0/175   --->[See Alignment]
a.4.5c.94.1
:326 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   11->205 3fzvC PDBj 1e-14 28.6 %
:RPS:PDB   9->248 1b9nB PDBj 7e-24 10.4 %
:RPS:SCOP  13->116 1b9mA1  a.4.5.8 * 3e-19 15.4 %
:RPS:SCOP  103->303 1i69A  c.94.1.1 * 2e-23 21.2 %
:HMM:SCOP  13->101 1ixcA1 a.4.5.37 * 2.1e-26 50.6 %
:HMM:SCOP  98->313 1uthA_ c.94.1.1 * 2.7e-31 28.4 %
:RPS:PFM   15->57 PF00126 * HTH_1 1e-07 60.5 %
:RPS:PFM   102->284 PF03466 * LysR_substrate 4e-08 28.2 %
:HMM:PFM   99->302 PF03466 * LysR_substrate 2.6e-36 27.7 202/209  
:HMM:PFM   15->74 PF00126 * HTH_1 1e-25 58.3 60/60  
:BLT:SWISS 13->257 YNFL_ECOLI 2e-31 30.2 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABF08429.1 GT:GENE ABF08429.1 GT:PRODUCT transcriptional regulator, LysR family GT:DATABASE GIB00349CH01 GT:ORG rmet0 GB:ACCESSION GIB00349CH01 GB:LOCATION 1668624..1669604 GB:FROM 1668624 GB:TO 1669604 GB:DIRECTION + GB:PRODUCT transcriptional regulator, LysR family GB:PROTEIN_ID ABF08429.1 GB:DB_XREF GI:93354340 InterPro:IPR000847 InterPro:IPR005119 LENGTH 326 SQ:AASEQ MTSGRDSLRRACMDLRHFRYFIAVAEELHFARAAERLHIEQSPLSRAIKELEEELGVTLFSRTTRSTRLTRAGQLFLESAYRVMAAFQQAQDSVKAVANGFQGQLRIALSDGITPSRLPILLALCRQEEPEIELRFFEVTLSQQIKGLQDDLYDVGFAQSDEVGDGIVAIPVWSDALMVAVPARHPLLAHKRIPLDELLRYPLVLCDPQICEGHAKHVDRVLRQADMEPLIAERVATGNLMMALVSAGFALALTGATHIAASREPGVVARPLASRVPPLTTYLLHTEGEPSDVLARFIERVQAIEVPDTPRSAMGHRPNPPEEAVP GT:EXON 1|1-326:0| BL:SWS:NREP 1 BL:SWS:REP 13->257|YNFL_ECOLI|2e-31|30.2|245/297| SEG 58->71|tlfsrttrstrltr| BL:PDB:NREP 1 BL:PDB:REP 11->205|3fzvC|1e-14|28.6|182/279| RP:PDB:NREP 1 RP:PDB:REP 9->248|1b9nB|7e-24|10.4|230/245| RP:PFM:NREP 2 RP:PFM:REP 15->57|PF00126|1e-07|60.5|43/60|HTH_1| RP:PFM:REP 102->284|PF03466|4e-08|28.2|181/207|LysR_substrate| HM:PFM:NREP 2 HM:PFM:REP 99->302|PF03466|2.6e-36|27.7|202/209|LysR_substrate| HM:PFM:REP 15->74|PF00126|1e-25|58.3|60/60|HTH_1| GO:PFM:NREP 2 GO:PFM GO:0003700|"GO:transcription factor activity"|PF00126|IPR000847| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF00126|IPR000847| RP:SCP:NREP 2 RP:SCP:REP 13->116|1b9mA1|3e-19|15.4|104/122|a.4.5.8| RP:SCP:REP 103->303|1i69A|2e-23|21.2|193/206|c.94.1.1| HM:SCP:REP 13->101|1ixcA1|2.1e-26|50.6|89/0|a.4.5.37|1/1|"Winged helix" DNA-binding domain| HM:SCP:REP 98->313|1uthA_|2.7e-31|28.4|211/0|c.94.1.1|1/1|Periplasmic binding protein-like II| OP:NHOMO 4239 OP:NHOMOORG 645 OP:PATTERN -----------------------------------------------------1-------------- 4541B1134452-175611-14223H11111344448AKK-64721-2----2232-2--222164I9F92-111----2324-----1111-2-----11611111114---------------1----------455-2---314324444233311111123287462111----1111-112-----328777778692878797328788878243612-344433HO111-1111-111111322-41312231-21244--11-11--1----------------------------------------------1-1-7411111211121344----4----51321891311114---1----1-24221-----25CEC2355B43655655565556-34644F9A965-FBB8357FG998DL22134G35341575455555565743122------------------------------169239SJFbYZZdbYIJIJITTZWLLLKEKcQWVdZW-2LHA7A8F6UAO4TC99442238411111-145364A2111--2--26113-3-332413-231275-1--1----------------------98E683366143559899348B77667866731-12439------G6E74CA9997975798-9889A5689897B778879ILI78374DACADCDDDBE9C9ABH56455563-844455435555---41111124233459F222123122121112BCBAC58253I6JKNLRVLUAPTQO4FEI1111111113233433333674448AADDDC55652221-3------------------------------------------------------71 -------------1------------------------------------------------------------------------------------------------------------------------------------------------4----1-----------1---------2--5-----4---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 322 STR:RPRED 98.8 SQ:SECSTR ###cHccHTEEEEcHHHHHHHHHHHHHccHHHHHHHHTccHHHHHHHHHHHHHHHTcccEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcTTccccccHHHHHTTTccccccEEEEEEEcccEEEEEETTcccEEEEEccHHHHHHHTccTTcEEEEEEcGGGcEEEccHHHHTTccEEEEEEEEEEEEcccEEEEEEEEEEEccTTccEEEEEEEGGGcTTccTTcEEEEEEcGGGcEEEcGGTTccEGGGccTTTcTTcEEEEccTTcccEEEEEEETTccccHHHHHHHHHHTTccHHHHHHHHHcccHHHHHHHH# DISOP:02AL 1-8,97-98,305-327| PSIPRED ccccccccccccccHHHHHHHHHHHHHccHHHHHHHHcccccHHHHHHHHHHHHHccEEEHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEEEcHHHHHHHHHHHHHHHHHccccEEEEEEccHHHHHHHHHccccEEEEEccccccccEEEEEEEEccEEEEEcccccccccccccHHHHccccEEEEccccccHHHHHHHHHHHHccccccEEEEEccHHHHHHHHHccccEEEccHHHHHccccccEEEEEcccccEEEEEEEEEccccccHHHHHHHHHHHHccccccccccccccccccccccc //