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Ralstonia metallidurans CH34 (rmet0)
Gene : ABF08482.1
DDBJ      :             cytochrome c, class I
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  177/915 : Eukaryota  2/199 : Viruses  0/175   --->[See Alignment]
a.28.2a.3.1
:438 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   318->427 2zooA PDBj 4e-13 37.5 %
:RPS:PDB   39->140 1c7mA PDBj 2e-12 16.8 %
:RPS:PDB   116->298 3dzjA PDBj 2e-33 11.0 %
:RPS:PDB   325->418 2dgeA PDBj 1e-12 14.9 %
:RPS:SCOP  39->140 1c2rA  a.3.1.1 * 1e-09 15.2 %
:RPS:SCOP  240->310 1ayiA  a.28.2.1 * 5e-13 12.7 %
:RPS:SCOP  286->429 1eb7A1  a.3.1.5 * 1e-20 16.7 %
:HMM:SCOP  21->166 1eb7A2 a.3.1.5 * 2.5e-25 30.3 %
:HMM:SCOP  184->298 3c2cA_ a.3.1.1 * 1.7e-23 27.7 %
:HMM:SCOP  324->429 1c52A_ a.3.1.1 * 2.8e-24 36.8 %
:HMM:PFM   42->139 PF00034 * Cytochrom_C 7.8e-11 29.8 84/91  
:HMM:PFM   189->297 PF00034 * Cytochrom_C 1.4e-07 25.0 84/91  
:HMM:PFM   325->409 PF00034 * Cytochrom_C 1.8e-07 20.2 84/91  
:BLT:SWISS 24->427 CYCA_ACEPO 3e-92 44.9 %
:REPEAT 2|17->153|156->305
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABF08482.1 GT:GENE ABF08482.1 GT:PRODUCT cytochrome c, class I GT:DATABASE GIB00349CH01 GT:ORG rmet0 GB:ACCESSION GIB00349CH01 GB:LOCATION 1724501..1725817 GB:FROM 1724501 GB:TO 1725817 GB:DIRECTION + GB:PRODUCT cytochrome c, class I GB:PROTEIN_ID ABF08482.1 GB:DB_XREF GI:93354393 InterPro:IPR003219 InterPro:IPR009056 LENGTH 438 SQ:AASEQ MHHNKNGTAMRGFAIGWLAWMTWLSVSTAWAAPPTASQAQVERGRYLARVANCVACHTAEGGAPMAGGLPLQTGAGTVYSTNITPEASTGLGRYSLDDFDRAVRRGVARDGRRLYPAMPYPSYARMTRDDVAAVYAWLRAEVKPVAQTNRDAQMRWPYSMRWLMVPWNLLHLEEGPIPASADRGAAWNRGAYLVQAVAHCGACHTPRGTLFGEKGTDTRSREFLSGATVEGWSATNLTGDMLTGLGAWSLAEIVEYLHTGRNAHATSFGPMSTVIASSTQYMTPGDLDAVATYLKSIPGARREAEPFRYDATVATQLEQGRFDTAGARQYATYCMPCHNASGKGYERVFPPLAGNPTVVDPNPASLVNLLLNGAVTARVNTAPTDYHMPGYGWTMEDQELAHLLTFIRSSWGNRAAPVTAQTVAERRKATGKQATNAR GT:EXON 1|1-438:0| BL:SWS:NREP 1 BL:SWS:REP 24->427|CYCA_ACEPO|3e-92|44.9|401/468| NREPEAT 1 REPEAT 2|17->153|156->305| SEG 100->113|dravrrgvardgrr| BL:PDB:NREP 1 BL:PDB:REP 318->427|2zooA|4e-13|37.5|104/438| RP:PDB:NREP 3 RP:PDB:REP 39->140|1c7mA|2e-12|16.8|95/100| RP:PDB:REP 116->298|3dzjA|2e-33|11.0|172/252| RP:PDB:REP 325->418|2dgeA|1e-12|14.9|94/102| HM:PFM:NREP 3 HM:PFM:REP 42->139|PF00034|7.8e-11|29.8|84/91|Cytochrom_C| HM:PFM:REP 189->297|PF00034|1.4e-07|25.0|84/91|Cytochrom_C| HM:PFM:REP 325->409|PF00034|1.8e-07|20.2|84/91|Cytochrom_C| RP:SCP:NREP 3 RP:SCP:REP 39->140|1c2rA|1e-09|15.2|99/116|a.3.1.1| RP:SCP:REP 240->310|1ayiA|5e-13|12.7|71/86|a.28.2.1| RP:SCP:REP 286->429|1eb7A1|1e-20|16.7|144/164|a.3.1.5| HM:SCP:REP 21->166|1eb7A2|2.5e-25|30.3|142/159|a.3.1.5|1/3|Cytochrome c| HM:SCP:REP 184->298|3c2cA_|1.7e-23|27.7|112/112|a.3.1.1|2/3|Cytochrome c| HM:SCP:REP 324->429|1c52A_|2.8e-24|36.8|106/131|a.3.1.1|3/3|Cytochrome c| OP:NHOMO 504 OP:NHOMOORG 179 OP:PATTERN -------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------11-41512----------------------------------------------------------------------------1------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1-12--------215422--21231----------3-13-1212211--41113212321243---31-2222--15555555515541-------------------------------------2443228BB8B75333387B7666636A793226-22121122152313-21--1112--------1231-1-----------------------------1-----------------------------11----11-22-111112-------11-------1-1-------1----1------------------------------111---------------------A---------2--------------------1111---------------------------2212-44442253-54441----------------------1-1--11--1-----------------------------------------------------------------12- --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1-----1---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 408 STR:RPRED 93.2 SQ:SECSTR ##############################TTcEEccHHHHHHHHHHTccccHHHHccTTTTccccccccGGGccccccccccTTGGGcccccTTEcccccHHHHHHHHHHcTTTccccTTccEEEEccHHHHHHHHHcTTcccGGGccccGHHHHHHTTccGGGcccccccccccccEEccTTTTccccHHHHHHHHHHHHHHHHHHccEEEEEEEEccccccTTcHHHHTTTTTccTTTEEEEEEEEEcccccccccGGGcHHcHHHHHHHHHHHTcEEEEEEEccHHHHHHHHHcTTccccccccGGGHHHHHHHHHHHHHcccTTTTccHHHHHTTcTTcEETTEEccccccccccTTTTccEEETTTTEEEcHHHHHHHHHTTTcccccTTcHHHHHHHHHHHHHTTTccccccEccccccTTcccccHHHHH DISOP:02AL 1-6,301-305,420-439| PSIPRED ccccccccHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHcccHHHcccccccHHcccccccccccEEEccccccccccccccccHHHHHHHHHHHHHccccccccccccHHHccccHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHcHHHHcccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHccccccccccccHHHHHHHHHcccHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHccccHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHccccccccc //