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Ralstonia metallidurans CH34 (rmet0)
Gene : ABF08514.1
DDBJ      :             transcriptional regulator, LysR family
Swiss-Prot:             

Homologs  Archaea  1/68 : Bacteria  630/915 : Eukaryota  6/199 : Viruses  0/175   --->[See Alignment]
a.4.5c.94.1
:311 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   5->257 3hhgG PDBj 1e-09 27.3 %
:RPS:PDB   4->120 1b9nA PDBj 1e-18 19.0 %
:RPS:PDB   95->307 1al3A PDBj 7e-13 17.1 %
:RPS:SCOP  1->107 1b9mA1  a.4.5.8 * 2e-19 19.6 %
:RPS:SCOP  95->293 1i69A  c.94.1.1 * 1e-22 21.4 %
:HMM:SCOP  4->92 1ixcA1 a.4.5.37 * 1.4e-22 49.4 %
:HMM:SCOP  89->309 1uthA_ c.94.1.1 * 8.1e-27 30.0 %
:RPS:PFM   9->64 PF00126 * HTH_1 2e-08 60.7 %
:RPS:PFM   98->293 PF03466 * LysR_substrate 1e-10 30.8 %
:HMM:PFM   95->291 PF03466 * LysR_substrate 2.6e-31 33.3 195/209  
:HMM:PFM   7->64 PF00126 * HTH_1 4.5e-24 55.2 58/60  
:BLT:SWISS 4->307 BBUR_BORBR 4e-29 31.0 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABF08514.1 GT:GENE ABF08514.1 GT:PRODUCT transcriptional regulator, LysR family GT:DATABASE GIB00349CH01 GT:ORG rmet0 GB:ACCESSION GIB00349CH01 GB:LOCATION complement(1759872..1760807) GB:FROM 1759872 GB:TO 1760807 GB:DIRECTION - GB:PRODUCT transcriptional regulator, LysR family GB:PROTEIN_ID ABF08514.1 GB:DB_XREF GI:93354425 InterPro:IPR000847 InterPro:IPR005119 LENGTH 311 SQ:AASEQ MSALNSDDLACFICVANTQSISRAALELGADQSTVSRQIARLEASLDTRLFHRSGRGVVLTEAGNTLLGYARQVAATLTEARAAVRASTAQGPAQLVIAAQPTIANTAFAAIGTALKTRFPATKLRFVEGLASPILAWLAAGEIDVALLYLPEQQGALKVDILLEEDLTLVTPTSWSHLGPTFQARRLGEVPMILPSTGHGLRVLAESLAARVGTTLNMALECDASNTVSMRLVEDGCGATLLPFAAVADRVAQGRLHSARLVDPVVTRQVALATARNRPPVPELWDIMQTVRLSVRNIVMSGAWPGARLI GT:EXON 1|1-311:0| BL:SWS:NREP 1 BL:SWS:REP 4->307|BBUR_BORBR|4e-29|31.0|303/325| BL:PDB:NREP 1 BL:PDB:REP 5->257|3hhgG|1e-09|27.3|245/294| RP:PDB:NREP 2 RP:PDB:REP 4->120|1b9nA|1e-18|19.0|116/258| RP:PDB:REP 95->307|1al3A|7e-13|17.1|211/237| RP:PFM:NREP 2 RP:PFM:REP 9->64|PF00126|2e-08|60.7|56/60|HTH_1| RP:PFM:REP 98->293|PF03466|1e-10|30.8|195/207|LysR_substrate| HM:PFM:NREP 2 HM:PFM:REP 95->291|PF03466|2.6e-31|33.3|195/209|LysR_substrate| HM:PFM:REP 7->64|PF00126|4.5e-24|55.2|58/60|HTH_1| GO:PFM:NREP 2 GO:PFM GO:0003700|"GO:transcription factor activity"|PF00126|IPR000847| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF00126|IPR000847| RP:SCP:NREP 2 RP:SCP:REP 1->107|1b9mA1|2e-19|19.6|107/122|a.4.5.8| RP:SCP:REP 95->293|1i69A|1e-22|21.4|192/206|c.94.1.1| HM:SCP:REP 4->92|1ixcA1|1.4e-22|49.4|89/0|a.4.5.37|1/1|"Winged helix" DNA-binding domain| HM:SCP:REP 89->309|1uthA_|8.1e-27|30.0|213/0|c.94.1.1|1/1|Periplasmic binding protein-like II| OP:NHOMO 4434 OP:NHOMOORG 637 OP:PATTERN -----------------------1-------------------------------------------- 3653831266522276511-11222D11111122327BIK-21642-111115632-3--23-113L7AA5-------1-2141----1111-2-------411-21213--------------------------46634---313226333332211111123364452111111111111121-----52988888BBA4988BA952779DA87232923-222233IP----------------1115-222332---155--42122--11-11--------------------------------------------23563333343132133311113-1--52321434312-153-1-1--12114331-----63JEH548CB7975656556645B-7AAA8KAIAD4-UGGAEHEOKLHFIJ573D9J878768B989999998AB55755------------------------------287-1AWQIYdghjlhJDBCBeehnFEFGBFvXiSfbX-2LGE9869ATCX8hD6B441-2B211111-111138622113231134444-3-2322241452475-31--------------------1---76744433727357333334543425464284--11225------B8BC4B68777866687-8778876867869667768IPJ972549588999999868687G47455572-522323232332---2121114334124CH3332-22221211136676632112D2LLLNLRGSKMOPO4GHL---------1157655555478229699AA95551111--2-----------------------------------------------------161 --------------------------------------------------------------------------------------------------------------------------------------------------------------5------1-------2-1------------5-----4---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 309 STR:RPRED 99.4 SQ:SECSTR ccHEcHHHHHHHHHHHHHccHHHHHHHHTccHHHHHHHHHHHHHHHTcccEEEccccEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHcccccTTcHHHHHHHHTcccTTccEEEEEEEccccccccTTccccccHHHHTcccEEcHHHHHcHHHHHHHHTcccccGGGGGGHHHHTccTTcEEEEccccEEEETTEEEEccHHHHHHcEEEcHTcccEEEEEEcccHHHHHHHHHHTccEEEEETGGGccTTTcTTcEEEEccTTcccEEEEEEEETTccccHHHHHHHHHHcTTccHHHHHHHHHcEE## DISOP:02AL 1-1,85-92| PSIPRED cccccHHHHHHHHHHHHHccHHHHHHHHccccHHHHHHHHHHHHHHccEEEEEccccEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEEEEcHHHHHHHHHHHHHHHHHccccEEEEEEccHHHHHHHHHcccccEEEEccccccccEEEEEEEEccEEEEEccccccccccccHHHHccccEEEcccccHHHHHHHHHHHHccccccEEEEEccHHHHHHHHHHcccEEEEccHHHHHHHcccccEEEEEccccccEEEEEEEEcccccccHHHHHHHHHHHHHHHHHHHcccccccEEc //