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Ralstonia metallidurans CH34 (rmet0)
Gene : ABF08653.1
DDBJ      :             transcriptional regulator, LysR family
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  360/915 : Eukaryota  5/199 : Viruses  1/175   --->[See Alignment]
a.4.5c.94.1
:314 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   10->177 3hhgG PDBj 9e-06 26.1 %
:RPS:PDB   7->247 1b9nB PDBj 3e-22 8.9 %
:RPS:SCOP  1->161 2p4wA1  a.4.5.64 * 4e-17 13.1 %
:HMM:SCOP  5->114 1b9mA1 a.4.5.8 * 9.4e-23 36.2 %
:HMM:SCOP  85->311 1uthA_ c.94.1.1 * 3e-30 30.7 %
:RPS:PFM   7->66 PF00126 * HTH_1 3e-05 41.7 %
:RPS:PFM   95->276 PF03466 * LysR_substrate 2e-06 38.4 %
:HMM:PFM   90->303 PF03466 * LysR_substrate 1.2e-32 31.8 198/209  
:HMM:PFM   7->66 PF00126 * HTH_1 1.4e-22 50.0 60/60  
:BLT:SWISS 2->305 GCVA_ECOLI 4e-28 31.8 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABF08653.1 GT:GENE ABF08653.1 GT:PRODUCT transcriptional regulator, LysR family GT:DATABASE GIB00349CH01 GT:ORG rmet0 GB:ACCESSION GIB00349CH01 GB:LOCATION complement(1925234..1926178) GB:FROM 1925234 GB:TO 1926178 GB:DIRECTION - GB:PRODUCT transcriptional regulator, LysR family GB:PROTEIN_ID ABF08653.1 GB:DB_XREF GI:93354564 InterPro:IPR000847 InterPro:IPR005119 LENGTH 314 SQ:AASEQ MQKLPPLRALQAFEAVARHRSFKAAAAELNVTPTAISHQIRMLEQICGKALLQRRPRPLRLTVAGERLYPALRSGFALFAEAVATVGQPGVARPLRVTSPNAFASRWLVPRLPAWQGLHPEWPLEIIGTDRVLDLAAGEADVAIRYARCAPKGLVSTEFARDTFFAVASPMLLARAGREGQATFDIGDLTHIPLIHYEWSSGDPHAPTWAQWFAAAGLTAGDSSARRGRHDLSFREELHAIDAVVAGQGVALCSNVVVDGLLRSGALCKAHALGLPGFGFYVAHAAGHPDLAAVEGFSGWLLSTAGTPAGEHPA GT:EXON 1|1-314:0| BL:SWS:NREP 1 BL:SWS:REP 2->305|GCVA_ECOLI|4e-28|31.8|289/305| SEG 51->61|llqrrprplrl| BL:PDB:NREP 1 BL:PDB:REP 10->177|3hhgG|9e-06|26.1|165/294| RP:PDB:NREP 1 RP:PDB:REP 7->247|1b9nB|3e-22|8.9|225/245| RP:PFM:NREP 2 RP:PFM:REP 7->66|PF00126|3e-05|41.7|60/60|HTH_1| RP:PFM:REP 95->276|PF03466|2e-06|38.4|164/207|LysR_substrate| HM:PFM:NREP 2 HM:PFM:REP 90->303|PF03466|1.2e-32|31.8|198/209|LysR_substrate| HM:PFM:REP 7->66|PF00126|1.4e-22|50.0|60/60|HTH_1| GO:PFM:NREP 2 GO:PFM GO:0003700|"GO:transcription factor activity"|PF00126|IPR000847| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF00126|IPR000847| RP:SCP:NREP 1 RP:SCP:REP 1->161|2p4wA1|4e-17|13.1|160/194|a.4.5.64| HM:SCP:REP 5->114|1b9mA1|9.4e-23|36.2|105/0|a.4.5.8|1/1|"Winged helix" DNA-binding domain| HM:SCP:REP 85->311|1uthA_|3e-30|30.7|212/0|c.94.1.1|1/1|Periplasmic binding protein-like II| OP:NHOMO 2608 OP:NHOMOORG 366 OP:PATTERN -------------------------------------------------------------------- --1----------------------1------------1----------------------------------------------------------------------------------------------------------11--1--------------1-------------------1--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1--B33711111A29DE121472444444434344D-68965E767T1-SIIEIJLLRQJJBC24437E63353DF222222226A912436-----------------------------121A624D77BSZbcacEDEEEPPNKFGFF6CiNIHKNH-1B8E84CAAK7G5O5387141193----------3932---------111-----------122525---------------------------11A8432-A45516866513856647675476------1------74651644563443344-6444523474635444443DFD842424232333333233322M42322231-522222222222---1------1---1BAE222311111111211434451223181HJFGJPLKCJMKK5DCD----------533A6666657987BG7767611-1-----1-------------------------------------------------------- --------------------------------------------------------------------------------------------------------------------------------------------------------------1--------------1----------1---1-----2---- --------------------------------------------------------------------------------------------------------------------------------------------------------1---------------------- STR:NPRED 314 STR:RPRED 100.0 SQ:SECSTR EEEEEEHHHHHHHHHHHHHccHHHHHHHHTccHHHHHHHHHHHHHHHTccEEEcTcccccccHHHHHHHHHHHHHHHHHHHHHHHHHcTTccccccHHHHTHHTTTccccccEEEEEEEcccEEEEEETTcccEEEEEccHHHHHHHTccTTcEEEEEEcGGGcEEEccHHHHTTccEEEEEEEEEEEEEEcccEEEEEEEcTTccEEEEEEEGGGcTTcTcccEGGGcTTcEEEEEEcGGGcEEEcccEEEEETTHHHHHHHTTcEEEcTTcccccEEEEEEHHHHHHTHHHHHHHHHHHHHHHTHHHHTHHH DISOP:02AL 1-2,84-93,306-315| PSIPRED ccccccHHHHHHHHHHHHHccHHHHHHHHcccHHHHHHHHHHHHHHHccHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEccHHHHHHHHHHHHHHHHHHccccEEEEEEcccccccccccccEEEEEcccccccEEEEEEEccEEEEEccHHHHHHccccccccccHHHHHcccEEEEccccccccHHHHHHHHHHcccccccccEEcccccEEEccHHHHHHHHHccccEEEEcHHHHHHHHHccccccccccccccccEEEEEcccccccHHHHHHHHHHHHHHccccccccc //