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Ralstonia metallidurans CH34 (rmet0)
Gene : ABF08696.1
DDBJ      :             transcriptional regulator, IclR family
Swiss-Prot:             

Homologs  Archaea  3/68 : Bacteria  312/915 : Eukaryota  1/199 : Viruses  0/175   --->[See Alignment]
a.4.5d.110.2
:260 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   9->244 2g7uA PDBj 4e-12 25.7 %
:RPS:PDB   20->73 1biaA PDBj 2e-06 26.4 %
:RPS:PDB   89->259 3d3oA PDBj 5e-23 13.6 %
:RPS:SCOP  15->88 1mkmA1  a.4.5.33 * 2e-09 19.2 %
:RPS:SCOP  90->259 1mkmA2  d.110.2.2 * 2e-24 17.8 %
:HMM:SCOP  13->88 1mkmA1 a.4.5.33 * 1.4e-11 38.7 %
:HMM:SCOP  84->260 1td5A_ d.110.2.2 * 6.5e-36 28.4 %
:RPS:PFM   137->246 PF01614 * IclR 5e-04 32.1 %
:HMM:PFM   136->252 PF01614 * IclR 6.3e-14 23.3 116/129  
:HMM:PFM   15->65 PF09339 * HTH_IclR 1.8e-13 39.2 51/52  
:BLT:SWISS 15->213 KIPR_BACSU 1e-14 28.0 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABF08696.1 GT:GENE ABF08696.1 GT:PRODUCT transcriptional regulator, IclR family GT:DATABASE GIB00349CH01 GT:ORG rmet0 GB:ACCESSION GIB00349CH01 GB:LOCATION 1971205..1971987 GB:FROM 1971205 GB:TO 1971987 GB:DIRECTION + GB:PRODUCT transcriptional regulator, IclR family GB:PROTEIN_ID ABF08696.1 GB:DB_XREF GI:93354607 InterPro:IPR005471 LENGTH 260 SQ:AASEQ MPTRPHHPDPAFATTLAHGLALLQCFRVGETVLGNKELADRTGLSKATISRLTYTLAARGLLLYDTHLRRYRLGSTALSLGYPLLASLRVRQLARPLMKALADQVGGSVSLGLRDRLRMVYVETSRGHDAIAFRPDIGASLPMLATAMGRAWLAWAPEDVRHRLLDALREAEPDDYERLAGAVDTAIEELATLGFTRSRGDWQRDVHAVAVPMRTPIDGEILVFNCGVPAVRMTPRKLEREMGPRLLKLVAQVETLVAWE GT:EXON 1|1-260:0| BL:SWS:NREP 1 BL:SWS:REP 15->213|KIPR_BACSU|1e-14|28.0|193/250| BL:PDB:NREP 1 BL:PDB:REP 9->244|2g7uA|4e-12|25.7|230/247| RP:PDB:NREP 2 RP:PDB:REP 20->73|1biaA|2e-06|26.4|53/292| RP:PDB:REP 89->259|3d3oA|5e-23|13.6|162/167| RP:PFM:NREP 1 RP:PFM:REP 137->246|PF01614|5e-04|32.1|109/127|IclR| HM:PFM:NREP 2 HM:PFM:REP 136->252|PF01614|6.3e-14|23.3|116/129|IclR| HM:PFM:REP 15->65|PF09339|1.8e-13|39.2|51/52|HTH_IclR| RP:SCP:NREP 2 RP:SCP:REP 15->88|1mkmA1|2e-09|19.2|73/75|a.4.5.33| RP:SCP:REP 90->259|1mkmA2|2e-24|17.8|169/171|d.110.2.2| HM:SCP:REP 13->88|1mkmA1|1.4e-11|38.7|75/0|a.4.5.33|1/1|"Winged helix" DNA-binding domain| HM:SCP:REP 84->260|1td5A_|6.5e-36|28.4|176/0|d.110.2.2|1/1|GAF domain-like| OP:NHOMO 925 OP:NHOMOORG 316 OP:PATTERN ------------------------1-----21------------------------------------ --2-4--1111----------2---5------223444FF-1-113------5431------3146C3521-----11----3--122-----1---------------------------------------------------1-------------------------------------24-1311-41-1111112--2-11-213331111111421--------42----------------------1-11----------------------------------------------------------------11-----------------1--------1----11--1--113-1-1---------------1-745--45235144334332321---2--3-173--322-1131-241541--233---1142--------2-1--1---------------------------------12--1GD6A7778874655477AB666636F4BDGHD--444-1244A231B5-1-1---11----------2-1------11-------141242411-----------1-------------------------1--1-------------------------------------2-111113443323223-4332422222422442443544---1-1111111111111111211-121-1-1--11--11111----------------34-----------1---222-2-22215-43231322133432211--------------------------11111------------------------------------------------------------------ --------------------------------------------------------------------------------------------------------------------------------------------------------------2---------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 251 STR:RPRED 96.5 SQ:SECSTR ########ccHHHHHHTcHHHHHHHHHHTTccccHHHHHHHHTccHHHHHHHHHHHHHTTcEEEEEEEEETTEEEEEEEEcccETTTccHHHHHHHHHHHHHHHHccEEEEEEEETTEEEEEEEEcccccccccccTTccccGGcHHHHHTTcHHHHHHHHHHHHTTccTHHHGGGTccccHHHHHHHHHHHHcEEEEEccccTTEEEEEEEEEEETTEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTTcccc# DISOP:02AL 1-16| PSIPRED ccccccccccccHHHHHHHHHHHHHHHcccccccHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccccccEEEHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccEEEEEEEccEEEEEEEEEccccEEEEEcccccccccccHHHHHHHHHccHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHccEEEccccccccEEEEEEEEcccccEEEEEEEEEEHHHccHHHHHHHHHHHHHHHHHHHHHHHccc //