[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Ralstonia metallidurans CH34 (rmet0)
Gene : ABF08751.1
DDBJ      :             diguanylate cyclase (GGDEF domain)
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  648/915 : Eukaryota  8/199 : Viruses  0/175   --->[See Alignment]
d.110.6d.58.29
:586 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   403->568 1w25A PDBj 1e-29 44.2 %
:RPS:PDB   380->569 3breA PDBj 2e-37 37.2 %
:RPS:SCOP  146->271 2basA2  d.110.6.2 * 6e-04 14.8 %
:RPS:SCOP  409->573 1w25A3  d.58.29.2 * 8e-35 41.4 %
:HMM:SCOP  409->573 1w25A3 d.58.29.2 * 2.2e-52 46.9 %
:RPS:PFM   407->565 PF00990 * GGDEF 8e-34 48.7 %
:HMM:PFM   404->566 PF00990 * GGDEF 1.6e-45 42.9 161/161  
:BLT:SWISS 51->567 YEDQ_SHIDS 1e-35 27.3 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABF08751.1 GT:GENE ABF08751.1 GT:PRODUCT diguanylate cyclase (GGDEF domain) GT:DATABASE GIB00349CH01 GT:ORG rmet0 GB:ACCESSION GIB00349CH01 GB:LOCATION 2031388..2033148 GB:FROM 2031388 GB:TO 2033148 GB:DIRECTION + GB:PRODUCT diguanylate cyclase (GGDEF domain) GB:PROTEIN_ID ABF08751.1 GB:DB_XREF GI:93354662 InterPro:IPR000160 LENGTH 586 SQ:AASEQ MHSASDTGQLVPSDRFLSRLWLALIRRPRRFILIAFSAAILLILLLIFRGMMLSRDAEIESVRQMQAVRAVSINALLQLEAERLTNIRNYAEHLMQIQDELPALFAHDIQTAFEHRNDDVWALRTRDAAPVFGVSAAQLTGLDGFLRDDAKLIPSMAVAIALSHMFSAGHNEPGLRERIAYVSGNGIIVAYPAISEQDVNPTLRSLASAAYFRNNLPLANPTRKQQWSIARSMDDIGESSLFLSAPVYAGNAFKAVLILEIPRHSLDESLNVAPHHDVNNYLVDHNGALVGASMRNVHRGESLASVLINKWPADKLAVAFRSDAGILSNEHGSRLIYRKLGNSGLIMVDEVSTRELLQASVARLSGAIGAGAVALGLLLCFTLAIVHTLFGHYIARGEALRTLAETDALTGLANRRVFASRFADAYAWCKRDAVPVSLIMLDIDRFKKINDRWGHASGDVVLRTLADALRANVRNVDLPARLGGEEFAVLLPRTGIADAANLAEKLRLALQALVCEPVDSDDTASIRFTASFGVAQIAPDEPGNLDSLLMVADQRLYAAKAGGRNKVVWDEPQPEEMANEKPVKGT GT:EXON 1|1-586:0| BL:SWS:NREP 1 BL:SWS:REP 51->567|YEDQ_SHIDS|1e-35|27.3|499/564| TM:NTM 2 TM:REGION 31->53| TM:REGION 364->386| SEG 29->49|rrfiliafsaaillilllifr| SEG 366->379|gaigagavalglll| BL:PDB:NREP 1 BL:PDB:REP 403->568|1w25A|1e-29|44.2|163/454| RP:PDB:NREP 1 RP:PDB:REP 380->569|3breA|2e-37|37.2|188/322| RP:PFM:NREP 1 RP:PFM:REP 407->565|PF00990|8e-34|48.7|156/160|GGDEF| HM:PFM:NREP 1 HM:PFM:REP 404->566|PF00990|1.6e-45|42.9|161/161|GGDEF| RP:SCP:NREP 2 RP:SCP:REP 146->271|2basA2|6e-04|14.8|122/145|d.110.6.2| RP:SCP:REP 409->573|1w25A3|8e-35|41.4|162/162|d.58.29.2| HM:SCP:REP 409->573|1w25A3|2.2e-52|46.9|162/0|d.58.29.2|1/1|Nucleotide cyclase| OP:NHOMO 8597 OP:NHOMOORG 656 OP:PATTERN -------------------------------------------------------------------- GA26D---111---25211-1J33-111111-B6667G75BD9Uu-------645-----C83-C2G6663---------C168BL66--------------------1----------------11111111181BDD9911194mUSEJJ223EE---2--8H9-EEK3------------Q8E549816A2777775672777777-23332777376D2HG333333AB11111111111111111111-121-------3311-1--1--1-----------------------------------------------4AA5I88888787774D454455849--7976BHGGC7758A522452--C396993-----27WRS97HZPJUW3376367567J-YWKTTATQBW51LRRRYYOYafIGTF7FA382DDAB784--------DEE3-fBR11111111111111111111111-11111-98GB3BA842JEGGIHD8887EEVZ999938JSRFPHQ-3NMLZJaLNX12pA8URVUIXYaM-------56FKlp4KRGKIPRApTMLN1KILZHOGYQ8868B665G656----------------TAGOC43cXHZeXqLjSdqhhjfimahhhWfbbWV*r---BbEi------CGJC3M7EEEDEDDDFC-CEDFE9ADEDDCDDEEDDFEHEDF--18489888888788897C787647A--E34444433444---T-----FFFFGBmFl---------------9899938-1-GaRRQQYYYXcXWVUTTUX-----2---YMSRSVUUUTUXVmmKOJNLNKDEF1111--b28866DD11111111615-------------------------A839679777-1- -----------------------------------------------------------------------------------------------1--------------------------------------------------------------2----4---------72----------1--8-----6---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 201 STR:RPRED 34.3 SQ:SECSTR ###########################################################################################################################################################################################################################################################################################################################################################################################HHHHHHHHHHHHHHHHHHHHHHHHHHccTTTccccHHHHHHHHHHHHHHHHHHTccEEEEEEEETTHHHHHHHHcHHHHHHHHHHHHHHHHTTccTTcEEEEEETTEEEEEEETccHHHHHHHHHHHHHHHHTTHccEEccccTcTEEccEEEEEEEEcccccccTHHHHHHHHHHHHHHHTTTcccEEEcccEEccTTcc###### DISOP:02AL 1-8,318-324,326-326,574-587| PSIPRED cccccccccccccccHHHHHHHHHHHcccEEEEEHHHHHHHHHHHHHHcccEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHccccccccEEcccHHHHHHccccccccHHHHHHHHHHHHHHHHHHHccccccccEEEEEEEcccEEEEccccccccccHHHHHHcccHHHHHccccccccccEEEEcccccccccccEEEEEEEEccccEEEEEEEEEEEHHHHHHHHHHHccccccEEEEEccccEEEEccccccccccccHHcccccHHHHHHHHHHcccccccccccEEEEEEEcccccEEEEEEccHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHcHHHHHHHHHHHHHHHHHHHHccccEEEEEEEcccccccccccccHHHHHHHHHHHHHHHHHcccccEEEEEccEEEEEEcccccHHHHHHHHHHHHHHHHHccccccccccccEEEEEEEEEEEEEEccccccHHHHHHHHHHHHHHHHHccccEEEEccccHHHHHHHcccccc //