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Ralstonia metallidurans CH34 (rmet0)
Gene : ABF08776.1
DDBJ      :             transcriptional regulator, LysR family
Swiss-Prot:             

Homologs  Archaea  1/68 : Bacteria  563/915 : Eukaryota  10/199 : Viruses  1/175   --->[See Alignment]
a.4.5c.94.1
:301 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   3->262 3hhgG PDBj 6e-32 31.6 %
:RPS:PDB   9->98 3broC PDBj 5e-13 8.9 %
:RPS:PDB   92->294 1al3A PDBj 1e-21 17.0 %
:RPS:SCOP  1->105 1b9mA1  a.4.5.8 * 1e-16 15.2 %
:RPS:SCOP  94->294 1al3A  c.94.1.1 * 3e-21 16.7 %
:HMM:SCOP  2->115 1b9mA1 a.4.5.8 * 2e-21 43.9 %
:HMM:SCOP  89->297 1uthA_ c.94.1.1 * 1.9e-41 30.7 %
:RPS:PFM   6->64 PF00126 * HTH_1 2e-06 47.5 %
:RPS:PFM   92->294 PF03466 * LysR_substrate 3e-10 31.0 %
:HMM:PFM   91->294 PF03466 * LysR_substrate 6e-43 28.6 199/209  
:HMM:PFM   8->65 PF00126 * HTH_1 1.7e-20 46.6 58/60  
:BLT:SWISS 3->301 YCAN_ECOLI 2e-58 37.8 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABF08776.1 GT:GENE ABF08776.1 GT:PRODUCT transcriptional regulator, LysR family GT:DATABASE GIB00349CH01 GT:ORG rmet0 GB:ACCESSION GIB00349CH01 GB:LOCATION complement(2064741..2065646) GB:FROM 2064741 GB:TO 2065646 GB:DIRECTION - GB:PRODUCT transcriptional regulator, LysR family GB:PROTEIN_ID ABF08776.1 GB:DB_XREF GI:93354687 InterPro:IPR000847 InterPro:IPR005119 LENGTH 301 SQ:AASEQ MHRTGMTELEAVLAVARRNSFRGAAQELGMSTTAVSSAVAGLEARLKVRLFNRSTRSVALTDAGLRYVERIAPALAAIKSAGEEAGSGPDVPSGTLRINAPQGAANLLLAPLFNVYAQRYPDVRIDIVSESRMIDVVAEGFDAGIRLAESVPQDMIAVPLSRDVRMLVVATPAYLEHHGTPRHPRDLLQHRSIGMRMSHGGIYQWELEHKGQKLQMDLPVRIALNEMPAIRQALLLGLGIGFISEWFIEDELKTGALVPVLAPWCPSFGGLRLYYSGHRFVPARLRALVSLVHELRLAEAQ GT:EXON 1|1-301:0| BL:SWS:NREP 1 BL:SWS:REP 3->301|YCAN_ECOLI|2e-58|37.8|296/302| BL:PDB:NREP 1 BL:PDB:REP 3->262|3hhgG|6e-32|31.6|256/294| RP:PDB:NREP 2 RP:PDB:REP 9->98|3broC|5e-13|8.9|90/129| RP:PDB:REP 92->294|1al3A|1e-21|17.0|200/237| RP:PFM:NREP 2 RP:PFM:REP 6->64|PF00126|2e-06|47.5|59/60|HTH_1| RP:PFM:REP 92->294|PF03466|3e-10|31.0|200/207|LysR_substrate| HM:PFM:NREP 2 HM:PFM:REP 91->294|PF03466|6e-43|28.6|199/209|LysR_substrate| HM:PFM:REP 8->65|PF00126|1.7e-20|46.6|58/60|HTH_1| GO:PFM:NREP 2 GO:PFM GO:0003700|"GO:transcription factor activity"|PF00126|IPR000847| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF00126|IPR000847| RP:SCP:NREP 2 RP:SCP:REP 1->105|1b9mA1|1e-16|15.2|105/122|a.4.5.8| RP:SCP:REP 94->294|1al3A|3e-21|16.7|198/237|c.94.1.1| HM:SCP:REP 2->115|1b9mA1|2e-21|43.9|107/0|a.4.5.8|1/1|"Winged helix" DNA-binding domain| HM:SCP:REP 89->297|1uthA_|1.9e-41|30.7|205/0|c.94.1.1|1/1|Periplasmic binding protein-like II| OP:NHOMO 7005 OP:NHOMOORG 575 OP:PATTERN -------------------------------------1------------------------------ 132-4-----1---21-----2---4------11111356--2---1-----212--2----1-123142------------1------------------1-----1-1---------------1---1------133-1----16223221121111111123173311111111111111--------224222222311311232112253332111511-------66------------------------11-----------1-----------1-----------------111111111-111-----------2-2322222211111122----3-1--3-21123411---3-11-1---2--K55311111Q7SQP44BAC3C89998889799P-GKJEBPGMFk81obbGbdUyxieeTL6666GK86898II77777777BHGAA76B-----------------------------127IA5GdTJj******bPTTQxx**bcacLi*y*Zpye-1URYFDIEDsFYGwA9N9266AU822222221324I952----22122212--1-234-216A3A8L12-------------------------11RKJ777W5BD6AKLKH9GIGEDCGFILETL---2215------DFDN2JCBCCAB9A8AA-CBAAD87ACAC8EBBABB5iphKH395E6EBECEDDFDCDCBCj86556663-G999AAA89AAA---2-2--2324413TLQ766C2G1112-41-1NNNNP8C455Z5nphmasqmRedggDSQT3532355452CIHXEEEEEINNHGYZEGHGE3344111--1---------------1--------------------------------------31 -----------------------------------------------------------------------------------------------------------------------------------------------1--------------3----3------F--5-1--------11--8-----7---- --------------------------------------------------------------------------------------------------------------------------------------------------------1---------------------- STR:NPRED 294 STR:RPRED 97.7 SQ:SECSTR HcTTHHHHHHHHHHHHHHccHHHHHHHHTccHHHHHHHHHHHHHHHTccccccccccEEEcHHHHHHHHHHHHHHHHHHHHHHHHHcTTcccEEEEEEEEcHHHHHHTcHHHHHHHHHHcTEEEEEEEEccHHHHHHTTcccEEEEcccccTTccEEEEEEEEEcEEEEEcTTcTTTTTccccHHHHHTcEEEEEEEcTTcTTHHHHHHHHHHHTcccEEEEEEccHHHHHHHHHHTccEEEEEGGGcHcTTTcTTcEEEEccTTcccEEEEEEEETTccccHHHHHHHHHHcT####### DISOP:02AL 1-3,85-89,299-302| PSIPRED cccccHHHHHHHHHHHHHccHHHHHHHHcccHHHHHHHHHHHHHHHccccEEccccccEEcHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEEccHHHHHHHHHHHHHHHHHHccccEEEEEEEccEEccccccccEEEEEcccccccEEEEEEcccccEEEEEcHHHHHHccccccHHHHHcccEEEEEcccccccEEEEEcccEEEEEEccccEEEccHHHHHHHHHccccEEEEEHHHHHHHHHccccEEEccccccccccEEEEEcccccccHHHHHHHHHHHHHHHcccc //