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Ralstonia metallidurans CH34 (rmet0)
Gene : ABF08808.1
DDBJ      :             transcriptional regulator, GntR family
Swiss-Prot:             

Homologs  Archaea  10/68 : Bacteria  493/915 : Eukaryota  2/199 : Viruses  0/175   --->[See Alignment]
a.4.5a.78.1
:249 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   44->249 3fmsA PDBj 2e-12 28.9 %
:RPS:PDB   28->249 3c7jA PDBj 3e-29 20.0 %
:RPS:SCOP  46->110 1e2xA1  a.4.5.6 * 2e-11 29.2 %
:RPS:SCOP  83->247 1e2xA2  a.78.1.1 * 3e-21 16.7 %
:HMM:SCOP  41->113 1hw1A1 a.4.5.6 * 2.8e-14 41.1 %
:RPS:PFM   46->106 PF00392 * GntR 3e-06 44.3 %
:RPS:PFM   116->240 PF07729 * FCD 2e-12 35.2 %
:HMM:PFM   116->239 PF07729 * FCD 2.3e-31 36.3 124/125  
:HMM:PFM   46->106 PF00392 * GntR 3.9e-19 45.9 61/64  
:BLT:SWISS 57->249 NTRA_CHEHE 6e-21 32.8 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABF08808.1 GT:GENE ABF08808.1 GT:PRODUCT transcriptional regulator, GntR family GT:DATABASE GIB00349CH01 GT:ORG rmet0 GB:ACCESSION GIB00349CH01 GB:LOCATION complement(2097132..2097881) GB:FROM 2097132 GB:TO 2097881 GB:DIRECTION - GB:PRODUCT transcriptional regulator, GntR family GB:PROTEIN_ID ABF08808.1 GB:DB_XREF GI:93354719 InterPro:IPR000524 InterPro:IPR002110 InterPro:IPR011711 LENGTH 249 SQ:AASEQ MKYHTSITATSNRFRSAVANPIRLVGAADAEPTIPTPAQSGAAMREHAYTEIKRRIISCEFRPGEPLNEAQVAALLGLGRTPVHQALHRLEVEGLVSILPRKGVLVTPLSLNEVLDMIEVRATNEVLCATLACERGHDSDFKAMRDIVDRSPELIARRDIPALAALDLKFHTAMSAASRNRVLADLLRGLHEKQARFWFLSLSDPQHLENVYQEHLEIVNALERRDVPAVREAIREHIDEFRKNIIRTL GT:EXON 1|1-249:0| BL:SWS:NREP 1 BL:SWS:REP 57->249|NTRA_CHEHE|6e-21|32.8|186/210| BL:PDB:NREP 1 BL:PDB:REP 44->249|3fmsA|2e-12|28.9|187/206| RP:PDB:NREP 1 RP:PDB:REP 28->249|3c7jA|3e-29|20.0|215/232| RP:PFM:NREP 2 RP:PFM:REP 46->106|PF00392|3e-06|44.3|61/64|GntR| RP:PFM:REP 116->240|PF07729|2e-12|35.2|125/125|FCD| HM:PFM:NREP 2 HM:PFM:REP 116->239|PF07729|2.3e-31|36.3|124/125|FCD| HM:PFM:REP 46->106|PF00392|3.9e-19|45.9|61/64|GntR| GO:PFM:NREP 3 GO:PFM GO:0003700|"GO:transcription factor activity"|PF00392|IPR000524| GO:PFM GO:0005622|"GO:intracellular"|PF00392|IPR000524| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF00392|IPR000524| RP:SCP:NREP 2 RP:SCP:REP 46->110|1e2xA1|2e-11|29.2|65/73|a.4.5.6| RP:SCP:REP 83->247|1e2xA2|3e-21|16.7|144/149|a.78.1.1| HM:SCP:REP 41->113|1hw1A1|2.8e-14|41.1|73/0|a.4.5.6|1/1|"Winged helix" DNA-binding domain| OP:NHOMO 2010 OP:NHOMOORG 505 OP:PATTERN ------2-11-11111-1--------------------------------------------1----- --113221222--122211-12--1L1-1111222248PI-2-3822--231CBB222----4-33C8661-----------7------------------------1----------------------------12243----4-----------------------1-------------3-111-1-5-21111111111111-16144111111-1-51-11111149---------------111111-1-22---------22------111---1111-11-----------1111111-1--1-----------25216111-1--1-134---2113122--2322452221-1231112-1-1-13332-----22F88--7613317756767666A-45F44I5DFG1-OEEEEEEHAHEAD9-2169C6599839111111113111-2-4-------------------------------16--7IF8C98979744442BBKG654432B3OCEED2333686434G7L1F9682----1-----------413--7131121-3111-3231222-2-------3--1------------------1-----111124114132222212322223232222----1--------2253-224334444444-343454445334444444544423--1626565666655665533324433---11111111111--------------2274---1-1----1----34344161--326676666B699962BCB-------------312112-1-111111-11----------2-----------------------------------------------12111--- -------------1------------------------------------------------------------------------------------------------------------------------------------------------------------------------------2---------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 222 STR:RPRED 89.2 SQ:SECSTR ###########################HHHHHHHccccccGGGHHHHHHHHHHHHHHTccccTTccccHHHHHHHHTccHHHHHHHHHHHHHTTcEEEETTTEEEEcccHHHHHHHHHHHHHHHHHHHHHHHGGGccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHTTTcccHHHHHHHHHHHHHHHHHHHHHTTHHcccccccHHHHHHHHHHHTTcHHHHHHHHHHHHHHHHHHHHHHH DISOP:02AL 1-2,18-47| PSIPRED cccHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHcccccccccccHHHHHHHHccccHHHHHHHHHHHHcccEEEEcccEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHc //