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Ralstonia metallidurans CH34 (rmet0)
Gene : ABF08834.1
DDBJ      :             transcription-repair coupling factor
Swiss-Prot:             

Homologs  Archaea  7/68 : Bacteria  881/915 : Eukaryota  21/199 : Viruses  0/175   --->[See Alignment]
b.34.18c.37.1d.315.1
:1150 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   16->1149 2eyqB PDBj 0.0 48.8 %
:RPS:PDB   16->321 1d9zA PDBj 4e-48 20.4 %
:RPS:PDB   558->961 3bxzB PDBj 1e-51 15.9 %
:RPS:PDB   975->1116 2e1rA PDBj 2e-04 21.4 %
:RPS:SCOP  31->340 2b2nA1  c.37.1.19 * 6e-96 45.1 %
:RPS:SCOP  363->471 2eyqA2  c.37.1.19 * 2e-14 22.4 %
:RPS:SCOP  476->553 2eyqA1  b.34.18.1 * 5e-30 57.7 %
:RPS:SCOP  554->786 2eyqA3  c.37.1.19 * 1e-83 59.2 %
:RPS:SCOP  788->997 2eyqA5  c.37.1.19 * 1e-78 67.6 %
:RPS:SCOP  998->1150 2eyqA6  d.315.1.1 * 2e-41 35.3 %
:HMM:SCOP  7->356 2eyqA4 c.37.1.19 * 3.4e-94 38.2 %
:HMM:SCOP  354->472 2eyqA2 c.37.1.19 * 1.1e-23 40.2 %
:HMM:SCOP  474->553 2eyqA1 b.34.18.1 * 6.1e-24 52.5 %
:HMM:SCOP  553->846 1z3iX2 c.37.1.19 * 4.1e-71 32.2 %
:HMM:SCOP  787->997 2eyqA5 c.37.1.19 * 1e-53 34.6 %
:HMM:SCOP  998->1151 2eyqA6 d.315.1.1 * 8.9e-43 37.0 %
:RPS:PFM   486->580 PF02559 * CarD_TRCF 2e-22 50.5 %
:RPS:PFM   631->771 PF00270 * DEAD 1e-08 36.0 %
:RPS:PFM   845->914 PF00271 * Helicase_C 9e-05 29.0 %
:RPS:PFM   1013->1113 PF03461 * TRCF 2e-18 37.6 %
:HMM:PFM   1013->1110 PF03461 * TRCF 1.1e-29 41.8 98/101  
:HMM:PFM   484->581 PF02559 * CarD_TRCF 2.2e-29 46.9 98/98  
:HMM:PFM   610->767 PF00270 * DEAD 1e-21 28.1 146/167  
:HMM:PFM   844->914 PF00271 * Helicase_C 2e-15 27.1 70/78  
:BLT:SWISS 16->1149 MFD_ECOLI 0.0 48.8 %
:PROS 230->243|PS00213|LIPOCALIN
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABF08834.1 GT:GENE ABF08834.1 GT:PRODUCT transcription-repair coupling factor GT:DATABASE GIB00349CH01 GT:ORG rmet0 GB:ACCESSION GIB00349CH01 GB:LOCATION 2124983..2128435 GB:FROM 2124983 GB:TO 2128435 GB:DIRECTION + GB:PRODUCT transcription-repair coupling factor GB:PROTEIN_ID ABF08834.1 GB:DB_XREF GI:93354745 InterPro:IPR001410 InterPro:IPR001650 InterPro:IPR002345 InterPro:IPR003711 InterPro:IPR004576 InterPro:IPR005118 InterPro:IPR006935 InterPro:IPR011545 LENGTH 1150 SQ:AASEQ MPDNHAAFPFASFPLIKPGLRHAVNGLTGSADALAVAAYARQHRRSAPMVAVVCAHAVDAQRLAEEIPWFAPELRVRLLPDWETLPYDSFSPHQDLVSERLATLHDIQGGQCDVMLVPASTALYRLAPPAFLAAYTFFFKQGAKLDEAALKAQFTLAGYEHVSAVMRPGEYSVRGGLIDLYPMGSALPYRIDLFGDEIETIRAFDPDSQRSLYPVKEVRLLPGREFPLDETARTAFRGRWRELFEGDPTKSPIYKDIGNGVPSAGIEYYLPLFFEQSATLFDYLPEGTQLAFSGNVDEAIRRFWADTTQRYNFMRHDRERPLLPPADLFLSEEQFFVGAKPLARLVLQRDAAPADAPAFAGHLPDVSVNRRAEDPLVNLESLLLNKATRVLMCADSAGRRETLLQLFAESGLRPMIVDDFAAFLAGDSHFSIAVAPLQTGFALPSAQMAFVTEAELYAGTARRSGRRKQEQASTVDAMVRDLAELKIGDPVVHSEHGIGRYQGLVTLDMGQGDEEFLHLDYDKGSKLYVPVHQLHVISRYSGADPETAPLHSLGTGQWDKAKRRAAQQIRDTAAELLNLYARRALREGFAFPLQPKDYEAFAESFGFEETPDQAAAIAAVIADMTSGKPMDRLVCGDVGFGKTEVALRAAFVAVLGGKQVAMLAPTTLLAEQHFQTLSDRFAEWPVRIVELSRFKTKKEIDAAIKQINEGTVDIVIGTHKLLSDEVKFQRLGLVIIDEEHRFGVRQKEALKTLRAEVDVLTLTATPIPRTLGMALEGLRDFSVIATAPQKRLAIKTFVRREEDGVIREAILRELKRGGQVYFLHNEVETIENKRAKLAELVPEARIAVAHGQMHERELERVMRDFVSRRDNILLCTTIIETGIDVPTANTILIHRADKFGLAQLHQLRGRVGRSHHQAYAYLLVHDVEGLTRQAQRRLEAIQQMEELGSGFYLAMHDLEIRGAGEVLGDKQSGEIHEIGFQLYTDMLNAAVKSLKAGKEPDLMAPLAATTEINLGTPALLPNDYCADVHERLSIYKRLANCEAGERVDDIQEELIDRFGRLPSQAQALIETHRLRIAAAPLGVRKIDAGEATVSMQFVPNPPIDAIRIIDLVQKNRHIKLAGQDKLRIEAKMPDVATRAQTIKHTLRQLA GT:EXON 1|1-1150:0| BL:SWS:NREP 1 BL:SWS:REP 16->1149|MFD_ECOLI|0.0|48.8|1122/1148| PROS 230->243|PS00213|LIPOCALIN|PDOC00187| SEG 350->360|daapadapafa| SEG 614->622|aaaiaavia| BL:PDB:NREP 1 BL:PDB:REP 16->1149|2eyqB|0.0|48.8|1122/1143| RP:PDB:NREP 3 RP:PDB:REP 16->321|1d9zA|4e-48|20.4|299/590| RP:PDB:REP 558->961|3bxzB|1e-51|15.9|396/440| RP:PDB:REP 975->1116|2e1rA|2e-04|21.4|112/828| RP:PFM:NREP 4 RP:PFM:REP 486->580|PF02559|2e-22|50.5|95/100|CarD_TRCF| RP:PFM:REP 631->771|PF00270|1e-08|36.0|136/167|DEAD| RP:PFM:REP 845->914|PF00271|9e-05|29.0|69/76|Helicase_C| RP:PFM:REP 1013->1113|PF03461|2e-18|37.6|101/101|TRCF| HM:PFM:NREP 4 HM:PFM:REP 1013->1110|PF03461|1.1e-29|41.8|98/101|TRCF| HM:PFM:REP 484->581|PF02559|2.2e-29|46.9|98/98|CarD_TRCF| HM:PFM:REP 610->767|PF00270|1e-21|28.1|146/167|DEAD| HM:PFM:REP 844->914|PF00271|2e-15|27.1|70/78|Helicase_C| GO:PFM:NREP 12 GO:PFM GO:0003700|"GO:transcription factor activity"|PF02559|IPR003711| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF02559|IPR003711| GO:PFM GO:0003676|"GO:nucleic acid binding"|PF00270|IPR011545| GO:PFM GO:0005524|"GO:ATP binding"|PF00270|IPR011545| GO:PFM GO:0008026|"GO:ATP-dependent helicase activity"|PF00270|IPR011545| GO:PFM GO:0003676|"GO:nucleic acid binding"|PF00271|IPR001650| GO:PFM GO:0004386|"GO:helicase activity"|PF00271|IPR001650| GO:PFM GO:0005524|"GO:ATP binding"|PF00271|IPR001650| GO:PFM GO:0003684|"GO:damaged DNA binding"|PF03461|IPR005118| GO:PFM GO:0004386|"GO:helicase activity"|PF03461|IPR005118| GO:PFM GO:0005524|"GO:ATP binding"|PF03461|IPR005118| GO:PFM GO:0006281|"GO:DNA repair"|PF03461|IPR005118| RP:SCP:NREP 6 RP:SCP:REP 31->340|2b2nA1|6e-96|45.1|306/308|c.37.1.19| RP:SCP:REP 363->471|2eyqA2|2e-14|22.4|107/117|c.37.1.19| RP:SCP:REP 476->553|2eyqA1|5e-30|57.7|78/80|b.34.18.1| RP:SCP:REP 554->786|2eyqA3|1e-83|59.2|233/233|c.37.1.19| RP:SCP:REP 788->997|2eyqA5|1e-78|67.6|210/211|c.37.1.19| RP:SCP:REP 998->1150|2eyqA6|2e-41|35.3|153/158|d.315.1.1| HM:SCP:REP 7->356|2eyqA4|3.4e-94|38.2|346/0|c.37.1.19|1/1|P-loop containing nucleoside triphosphate hydrolases| HM:SCP:REP 354->472|2eyqA2|1.1e-23|40.2|117/0|c.37.1.19|1/1|P-loop containing nucleoside triphosphate hydrolases| HM:SCP:REP 474->553|2eyqA1|6.1e-24|52.5|80/0|b.34.18.1|1/1|CarD-like| HM:SCP:REP 553->846|1z3iX2|4.1e-71|32.2|276/0|c.37.1.19|1/1|P-loop containing nucleoside triphosphate hydrolases| HM:SCP:REP 787->997|2eyqA5|1e-53|34.6|211/0|c.37.1.19|2/2|P-loop containing nucleoside triphosphate hydrolases| HM:SCP:REP 998->1151|2eyqA6|8.9e-43|37.0|154/0|d.315.1.1|1/1|TRCF domain-like| OP:NHOMO 1942 OP:NHOMOORG 909 OP:PATTERN --------------------------------------11111-------11---------------- 3332222222222221222-22222222222222222222222222222222222222222222222222221222222221211222222232222--2333232223311111111111111133232222322222223332323322222222222222322222222222222222222232233222222222222222222222222222222222232222222322222222222222222222222222222222222222222222222222222222222222222222222222222222233222222222222222223222222222222222322222222223121322222222222222223232234333333333333323333333-44444433222222222222322223222222223332222222222222223223322222211--2212222222222111112232222222222222222222222222222233222222222232222222232222222332222222222433211111111111111222222222222221111322322222222222222222232332222222222222222222322222222222-22332-1111132222323333333333-33333333333333333332223222233333333333333332333333321222222222222--23222222222322333322322332223332222322222223333433332222223222222222232222222222223222222222222222221222222222222222322---1---1-----------------2223332333212 --------------------------------------------------------------------------------------------------------1----------------------------------------------------------2---------2-1-12A2221-1224-22111---1 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 1140 STR:RPRED 99.1 SQ:SECSTR #TTHHHHTTTHHHHHHHTTccEEEEEcTTccHHHHHHHHHHHHcccEccEEEEcccHHHHHHHHHHHHHHccccEEEEEccTcccccccEETTTTEEccccccccTHTTTcccEEEEEcGGGGccccccTTTccccEEEEccccccTTTHHHHTTTTTcccccccccccccccccTTccccEEcccTTcccccEEEccccEcEEEcccccccccccEEEEcccccccccHHHHHHHHccTTcccccHHHHHHHHHHHHTccccccGGGGHHHHTcccccGGGccccccEETHHHHHHHHHTHHHHHHHHHHHHHHTTcccGcccGGGTcccHHHHHHTTTTccccccccccccccTTcccEcccccccccccccTTHHHHHHHHHccccEEEEEccHHHHHHHHHHHTTTTcccccccc#####cccccccEEEccccccEEETTTTEEEcccTTTcc###cccccccTTcccccHHHHTTTccccTTcEEEEGGGcEEEEccEEEEEETTTTEEEEEEEcTTccEEEEEEEccccccEcTTcTTTcccccccHHHHHHHHHHHHHHHHHHTHHHHTTccHHHHHTHHHHHHHHHHTTccGGGcHHHHHcccHHHHHHHHHTTTcTTTcETEEEEccTTccHHHHTHHHHHHHTTccccEEEEEccHHHHHHHHHTTHHHHHHTTccEEEccTTccHHHHHHHHHcHHHHHHHHHHHHTcccGGGcccccccEEEEETccEEccEEccTTTGGGcccEEEEEEccccTTccHHHHHcccEEEEcccccccccEEcccEEHHHHHHHHHHHHHHHHHTccEEEEcccHHHHHHHHHHHHHHHTcccccEEccccHHHHHHHHTTTTccccEEEEcTTccTTccccTTccTHHHHTTcccccTTTTHHHHTTHHHHHHHHHHTTccEEEccTTHHHHHHHTccGGGcccEEEEEEEHHHHccccccccccHHHHHHHHHTcccccHHHHHccHHHHHHHHHccccHHHHHHHHHHHHHTTcccccccGGGGGGGGGGGGccccEccEcccccccccccEEcccHHHHHHHHHHHTTcHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHTcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHcHH# DISOP:02AL 1-4,8-9,457-478,550-552,1000-1001| PSIPRED ccccccccccccccccccccEEEEccccccHHHHHHHHHHHHHcccccEEEEEcccHHHHHHHHHHHHHHcccccEEEccHHcccccccccccHHHHHHHHHHHHHHHcccccEEEEcHHHHHcccccHHHHHHcEEEEEEcccccHHHHHHHHHHcccEEccccccccEEEEEccEEEEEcccccccEEEEEEccEEEEEEEEEcccccEEccccEEEEEccccccccHHHHHHHHHHHHHHHccccccHHHHHHHHcccccccHHHHHHHHcccccHHHHHcccccEEEEccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHccccEEEEEccccccccccccccccccccccccHHHHHHHHHHHHHccccEEEEEccHHHHHHHHHHHHHccccEEEcccHHHHccccccEEEEEEcHHccEEcccccEEEEEccccccccccccccccccccccHHHccccccccccccEEEccccccEEEEEEEEEEcccEEEEEccEEcccccEEcccHHHHHHHHHccccccccccHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHccccccHHHHHHHHHHHHHHHccccccEEEEEcccccHHHHHHHHHHHHHHccccEEEEEccHHHHHHHHHHHHHHHcccccEEEEEEccccHHHHHHHHHHHHcccccEEEccHHHHHHHcccccccEEEEEcHHHHHHHHHHHHHHccccEEEEEEEccccHHHHHHHHHccccEEEEEEcccccEEEEEEEEcccHHHHHHHHHHHHHcccEEEEEEccHHHHHHHHHHHHHHcccccEEEEEccccHHHHHHHHHHHHHccccEEEEHHHHHHccccccccEEEEEccccccHHHHHHHHHHccccccccEEEEEEcccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHccccccccHHHcccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccEEEccccccccHHHcccHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcccEEEEEEccEEEEEEcccccccHHHHHHHHHHcccEEEccccEEEEEEccccHHHHHHHHHHHHHHHc //