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Ralstonia metallidurans CH34 (rmet0)
Gene : ABF08887.1
DDBJ      :             Integrase, catalytic region
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  42/915 : Eukaryota  1/199 : Viruses  0/175   --->[See Alignment]
c.55.3
:479 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   225->338 1c1aA PDBj 6e-10 33.9 %
:RPS:PDB   180->318 1cxuA PDBj 7e-11 24.4 %
:RPS:SCOP  180->298 1b92A  c.55.3.2 * 1e-07 15.1 %
:HMM:SCOP  170->342 1c0mA2 c.55.3.2 * 5.7e-28 30.5 %
:RPS:PFM   180->287 PF00665 * rve 2e-08 36.6 %
:HMM:PFM   174->294 PF00665 * rve 2.4e-21 29.3 116/120  
:BLT:SWISS 200->308 POL_HTL3P 2e-09 35.2 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABF08887.1 GT:GENE ABF08887.1 GT:PRODUCT Integrase, catalytic region GT:DATABASE GIB00349CH01 GT:ORG rmet0 GB:ACCESSION GIB00349CH01 GB:LOCATION 2175388..2176827 GB:FROM 2175388 GB:TO 2176827 GB:DIRECTION + GB:PRODUCT Integrase, catalytic region GB:PROTEIN_ID ABF08887.1 GB:DB_XREF GI:93354798 InterPro:IPR001584 LENGTH 479 SQ:AASEQ MSLSIDHRNRWARLRFSVIGPLLASPPAKGELQQAFQALAAKVWRHPITGADVQFGASSIERWYYRARHVQDPVDQLKNRLRDDCGHFVSLSPAIIEALVEQYRQHPGWTMQLHYDNLRVATKDGPDTLPSYTTVCRYLKAQGLVRKPTPRSSTDGAIAAAARREAREVRSYEVDHVAALWHLDFHHGSRKVLTPDGQWHKPLLLCIMDDHSRLVCHLQWFLDETTASLVHGVSQAIMKRGLPRAIMTDNGAAMMADEFVEGLASLGILHQTTLPYSPYQNAKQERFWGQLESRLMAMLEGESHLTLEQLNLATQAWVEQEYHHKEHAELEATPLQRYLSCADVSRPSPEALALRRAFRIRQHRRQRRTDGTFTLDGVRFEIPGAYRHLEQVCLSYARWDLSQVDLIDARIGAILAAVFPLDKSANADARRAHLTAKGASPANEEPAQAGTAPLLRQLLAEHAATGLPPAYLPPAPTKL GT:EXON 1|1-479:0| BL:SWS:NREP 1 BL:SWS:REP 200->308|POL_HTL3P|2e-09|35.2|108/1440| SEG 157->170|aiaaaarrearevr| SEG 355->368|rrafrirqhrrqrr| BL:PDB:NREP 1 BL:PDB:REP 225->338|1c1aA|6e-10|33.9|112/221| RP:PDB:NREP 1 RP:PDB:REP 180->318|1cxuA|7e-11|24.4|131/143| RP:PFM:NREP 1 RP:PFM:REP 180->287|PF00665|2e-08|36.6|101/116|rve| HM:PFM:NREP 1 HM:PFM:REP 174->294|PF00665|2.4e-21|29.3|116/120|rve| GO:PFM:NREP 2 GO:PFM GO:0003677|"GO:DNA binding"|PF00665|IPR001584| GO:PFM GO:0015074|"GO:DNA integration"|PF00665|IPR001584| RP:SCP:NREP 1 RP:SCP:REP 180->298|1b92A|1e-07|15.1|106/144|c.55.3.2| HM:SCP:REP 170->342|1c0mA2|5.7e-28|30.5|164/0|c.55.3.2|1/1|Ribonuclease H-like| OP:NHOMO 147 OP:NHOMOORG 43 OP:PATTERN -------------------------------------------------------------------- B----------1-2--311-11----11111-1--1--11--------------1-----------------------------------------------------------------------------------------------------------------------------------------2-------------------------37-----------------------------------------------------------------------------------------------------------------------------------3--2---154---3-48----------------------------------------------------------------------------------------------------------------------------------------1-------------6---------9---B--------------3---J---------------------4------------------1-7-----1---------------------------55-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------1--------------------------------------------------------------------------------------------------------------- --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1---------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 167 STR:RPRED 34.9 SQ:SECSTR ###########################################################################################################################################################################ccTcccTTEEEEEEEEETTEcGGGTTccEcEEEEEEEETTTcccEEEEEEccccHHHHHHHHHHHHHHHccccEEEEEccHHHHcHHHHHHHHHHTcEEEEEcTTcHHHHHHHHHHHHHHHHHHHHHHHHTTcccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHH############################################################################################################################################# DISOP:02AL 1-1,3-6,78-91,362-369,428-449,478-480| PSIPRED ccccHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHccccHHHHHHHHccccHHHHHHHHHHHHcHHHHHcccccccccccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHccccccccEEEEEEEccccEEEccccccccEEEEEEEEcccccEEEEEEcccccHHHHHHHHHHHHHHcccccEEEEccccccccHHHHHHHHHcccEEEEccccccccccEEHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHcccccccccccHHHHHHccccccccccccHHHHHHHHHHHHHHHcccccEEEEccEEEEccHHHccccEEEEEEcccccEEEEEEEccccEEEEEEEEccccccHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHccccccccccccccc //