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Ralstonia metallidurans CH34 (rmet0)
Gene : ABF08906.1
DDBJ      :             secretion protein HlyD
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  431/915 : Eukaryota  2/199 : Viruses  0/175   --->[See Alignment]
f.46.1
:413 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:RPS:PDB   214->277 2ejmA PDBj 2e-12 20.3 %
:RPS:SCOP  57->92,196->345 1t5eA  f.46.1.1 * 6e-13 16.4 %
:HMM:SCOP  47->116 1vf7A_ f.46.1.1 * 2.9e-06 32.9 %
:HMM:SCOP  179->267 1vf7A_ f.46.1.1 * 2.9e-05 30.3 %
:RPS:PFM   202->313 PF00529 * HlyD 1e-14 45.0 %
:HMM:PFM   60->343 PF00529 * HlyD 1.5e-72 39.1 284/306  
:BLT:SWISS 1->387 EMRA_ECOLI 4e-77 39.0 %
:TM
:COIL
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABF08906.1 GT:GENE ABF08906.1 GT:PRODUCT secretion protein HlyD GT:DATABASE GIB00349CH01 GT:ORG rmet0 GB:ACCESSION GIB00349CH01 GB:LOCATION 2192292..2193533 GB:FROM 2192292 GB:TO 2193533 GB:DIRECTION + GB:PRODUCT secretion protein HlyD GB:PROTEIN_ID ABF08906.1 GB:DB_XREF GI:93354817 InterPro:IPR006143 LENGTH 413 SQ:AASEQ MSNNQQSASQKPAPTGDSKRKRLLTTLTAAIVVAGVGYGLYWGLYARHFESTDDAYVAGNVVQVTPLVGGTVVSIAADDTQLVTAGQPLIQLDRADTQVAMEQAEAQLAQAVREVRTLYVNNASLAANVALRDADVAKARDDLRRRQAIAGSGAVSSEEISHAQTALKAAESALLASKEQLASNQVLTDQTTVEKHPNVQRAAANLRSAYLSFARSTLPAPVTGYVAKRSVQVGQRVAAGTPLMAVVPLDQVWVDANFKEVQITHMRIGQPVELEADVYGSKVKYQGHVEGFSAGTGAAFSLLPAQNATGNWIKVVQRLPVRIALDAQQLKEHPLRVGLSMNVTVDVRKEEGAAMVTATNARPLQTDVYDKVAQDADELIARIISVNNGGRTPAPAAPGGASAARAAAKPANT GT:EXON 1|1-413:0| BL:SWS:NREP 1 BL:SWS:REP 1->387|EMRA_ECOLI|4e-77|39.0|387/390| COIL:NAA 45 COIL:NSEG 2 COIL:REGION 91->118| COIL:REGION 158->174| TM:NTM 2 TM:REGION 23->45| TM:REGION 55->77| SEG 98->115|qvameqaeaqlaqavrev| SEG 120->131|vnnaslaanval| SEG 166->183|alkaaesallaskeqlas| SEG 389->411|ggrtpapaapggasaaraaakpa| RP:PDB:NREP 1 RP:PDB:REP 214->277|2ejmA|2e-12|20.3|64/99| RP:PFM:NREP 1 RP:PFM:REP 202->313|PF00529|1e-14|45.0|111/259|HlyD| HM:PFM:NREP 1 HM:PFM:REP 60->343|PF00529|1.5e-72|39.1|284/306|HlyD| GO:PFM:NREP 3 GO:PFM GO:0008565|"GO:protein transporter activity"|PF00529|IPR006143| GO:PFM GO:0009306|"GO:protein secretion"|PF00529|IPR006143| GO:PFM GO:0016020|"GO:membrane"|PF00529|IPR006143| RP:SCP:NREP 1 RP:SCP:REP 57->92,196->345|1t5eA|6e-13|16.4|176/231|f.46.1.1| HM:SCP:REP 47->116|1vf7A_|2.9e-06|32.9|70/237|f.46.1.1|1/3|HlyD-like secretion proteins| HM:SCP:REP 179->267|1vf7A_|2.9e-05|30.3|89/237|f.46.1.1|3/3|HlyD-like secretion proteins| OP:NHOMO 1138 OP:NHOMOORG 433 OP:PATTERN -------------------------------------------------------------------- 214--------------------------------------------------------------------------------11111222--1-----1-21--4-1-1--------------111111-111----------------------------1------1---------------------2-1------1-1--------------1111--1-------1-11111111111111111111--------------------------------------------------------------------------1------------11------------1-111-2---11-------11-611122222448542-27312224332433334-23322647141-62225425544332-1-1-11122---4444444428852124------------1111111111111-----1362222114889998855556688555534A674657--114--12121113-12--111321111111---1------1-1--1---1-2-122131111-1---1-----------------------1143212-111-11-12222-13322-3122-211------------34322343333344234-333334433334333333447411223343333333333333334332333--211111111111----11111----12133----1--1111----56555241113-88889985287972444111111111-133611111231214444444333------------------------------------------------------------42- -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------1--------------------3---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 146 STR:RPRED 35.4 SQ:SECSTR #######################################################################################################################################################################################TcEEEEEEEETTEEEEEEEEccccccccccccccccccccEEEEEEcccTTEEEccccEEEEEEccccEEEEEccccEEEEEEcccTTEEEcTTEEETTTTEEEEEEEEEEEETTEEEEEEEEEccccEEEEEEEEEEEETTEEEE#################################################################################### DISOP:02AL 1-23,394-407,409-414| PSIPRED cccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccEEEEEEEEEEEcccccEEEEEEcccccEEEcccEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccEEEccccEEEEEEEEccccEEcccccEEEEEEcccEEEEEEEEHHHHHHcccccEEEEEEEEccccEEEEEEEEEEEccccccccccccccccccEEEEEEEEEEEEEEccccccccccccccEEEEEEEEEcccccccccccccEEEEEEEEEEEcHHHHHHHHHHHHcccccccccccccccHHHHHHccccccc //