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Ralstonia metallidurans CH34 (rmet0)
Gene : ABF09005.1
DDBJ      :             transcriptional regulator, LysR family
Swiss-Prot:             

Homologs  Archaea  8/68 : Bacteria  682/915 : Eukaryota  7/199 : Viruses  1/175   --->[See Alignment]
a.4.5c.94.1
:301 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   11->184 3hhgG PDBj 2e-10 28.2 %
:RPS:PDB   1->153 1c0wA PDBj 2e-22 6.8 %
:RPS:SCOP  1->106 1b9mA1  a.4.5.8 * 2e-16 20.8 %
:RPS:SCOP  93->294 1i69A  c.94.1.1 * 3e-30 18.9 %
:HMM:SCOP  4->117 1b9mA1 a.4.5.8 * 1.4e-25 37.4 %
:HMM:SCOP  91->299 1uthA_ c.94.1.1 * 3.3e-40 26.9 %
:RPS:PFM   11->67 PF00126 * HTH_1 3e-08 49.1 %
:RPS:PFM   95->294 PF03466 * LysR_substrate 2e-16 29.0 %
:HMM:PFM   92->293 PF03466 * LysR_substrate 2e-41 27.4 201/209  
:HMM:PFM   11->67 PF00126 * HTH_1 4.4e-19 49.1 57/60  
:BLT:SWISS 6->275 RBCR_SYNY3 1e-24 25.6 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABF09005.1 GT:GENE ABF09005.1 GT:PRODUCT transcriptional regulator, LysR family GT:DATABASE GIB00349CH01 GT:ORG rmet0 GB:ACCESSION GIB00349CH01 GB:LOCATION complement(2308116..2309021) GB:FROM 2308116 GB:TO 2309021 GB:DIRECTION - GB:PRODUCT transcriptional regulator, LysR family GB:PROTEIN_ID ABF09005.1 GB:DB_XREF GI:93354916 InterPro:IPR000847 InterPro:IPR005119 LENGTH 301 SQ:AASEQ MNLARFDLVTLGLFVAVARQGSISAGARQSHLAVAAASKRISDLETAVGAPLFFRHAAGVQLTEAGQACFHHALTILQDVERMAGVMSDYASGVRGQVRVCANTSAITQFLPDDLAQFMRQHPTIRIELEEHNSSDIVAAVMENRADVGIFADRTPCAGLVTLEYRQDELVIITPPGHPLAQNGPVHYADALEYDFVSLPQVTSLAARLLEESSRLERQFRLRIQVRSFDAMCRMVMAGLGVGVLPRIAAEPHVKSMGLSLVGLRDAWARRSLLIGMRDPAGLTVSARLLISHLCGDRAPF GT:EXON 1|1-301:0| BL:SWS:NREP 1 BL:SWS:REP 6->275|RBCR_SYNY3|1e-24|25.6|270/345| BL:PDB:NREP 1 BL:PDB:REP 11->184|3hhgG|2e-10|28.2|170/294| RP:PDB:NREP 1 RP:PDB:REP 1->153|1c0wA|2e-22|6.8|147/173| RP:PFM:NREP 2 RP:PFM:REP 11->67|PF00126|3e-08|49.1|57/60|HTH_1| RP:PFM:REP 95->294|PF03466|2e-16|29.0|200/207|LysR_substrate| HM:PFM:NREP 2 HM:PFM:REP 92->293|PF03466|2e-41|27.4|201/209|LysR_substrate| HM:PFM:REP 11->67|PF00126|4.4e-19|49.1|57/60|HTH_1| GO:PFM:NREP 2 GO:PFM GO:0003700|"GO:transcription factor activity"|PF00126|IPR000847| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF00126|IPR000847| RP:SCP:NREP 2 RP:SCP:REP 1->106|1b9mA1|2e-16|20.8|106/122|a.4.5.8| RP:SCP:REP 93->294|1i69A|3e-30|18.9|196/206|c.94.1.1| HM:SCP:REP 4->117|1b9mA1|1.4e-25|37.4|107/0|a.4.5.8|1/1|"Winged helix" DNA-binding domain| HM:SCP:REP 91->299|1uthA_|3.3e-40|26.9|208/0|c.94.1.1|1/1|Periplasmic binding protein-like II| OP:NHOMO 7652 OP:NHOMOORG 698 OP:PATTERN -----------------------1-----------1111-1-1----------1-------------- 3661811255431287611-13115F11111324446FST-6146221111-6543-3--241-73MAC84------111234111111111-1------13-112-1-2---------------1--------1-45534---216436445343311111134267562111111111111231-----629BBBBCBDC3CACABB7398BEDBA2446321233233LW-11-1111-11111142214113234211126611331211-1---1------------------------------------------1-44763333343131-4442222631--633219C551212632111--1412C44411111A6SMP659AD6B57787778778F-ADHAAXDOHO71gQQGLOIZcQQNZN6857AME7EH6FNDCDDDDDD9BF64567-----------------------------1-7G51JsfSsz*****VNQQPoo**VWVVKU*s*n**t14cXPBGQLI*Lh8*NBNA7648SD22222125445EG22213231247442-3-35351425655CE13-----------------------11DCHDD498H5A9AHFFGF5DEHCBCHEFJCII1--442A------OGIH9NGMOPJMIHHMK-PLLMMFIMJLPIMKLLMLFVbWGJ588IGGCFIIIIEHHJHCFVEECEEFG3-956567556767---511111121145IJR455726-33222223IJJJLCK358W7ggdfemZnLllpdALMN211-1111159EEQCCCCCBEJFGCCGLJLJ8992111--2-11------------1-------------------------------------371 -------------2------------------------------------------------------------------------------------------------------------------------------------------------7----1---------1-1------------9-----3---- --------------------------------------------------------------------------------------------------------------------------------------------------------1---------------------- STR:NPRED 299 STR:RPRED 99.3 SQ:SECSTR ccHHHHHHHHHHHHHHHTccccHHHHHHHHTccHHHHHHHHHHHHHTTcEEEcTTcTccEEEcHHHHHHHHHHHHHHHHHHHHHHHTTcccHHHHHHHHHHHTTTccHHHHHHccEEHHHHcccccccTTccccccHHHHTcccEEcHHHHHcEEEEEcGGGcEEEccHHHHTTccEEEEEEEEEEEEcccEEEEEEEcTTccEEEEEEHHHEGGGcTTccTTcEEEEEEcGGGcEEEcccEEEEEGGGcHcTTTcTTcEEEEccTTcccEEEEEEEETTccccHHHHHHHHHHHcTTT## DISOP:02AL 1-3,87-94,299-302| PSIPRED cccccccHHHHHHHHHHHHHccHHHHHHHHccccHHHHHHHHHHHHHHccEEEEEccccEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEEEHHHHHHHHHHHHHHHHHHccccEEEEEEccHHHHHHHHHcccccEEEEccccccccEEEEEEEcccEEEEEcccccccccccccHHHHccccEEEcccccHHHHHHHHHHHHccccccEEEEEccHHHHHHHHHccccEEEcHHHHHHHHcccccEEEEEccccccEEEEEEEEcccccccHHHHHHHHHHHHHcccc //