[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Ralstonia metallidurans CH34 (rmet0)
Gene : ABF09014.1
DDBJ      :             transcription termination factor Rho
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  784/915 : Eukaryota  9/199 : Viruses  0/175   --->[See Alignment]
a.140.3a.35.1b.40.4c.37.1
:420 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   1->417 1pvoA PDBj e-158 68.1 %
:RPS:PDB   51->417 2ck3D PDBj 2e-72 18.7 %
:RPS:SCOP  2->47 1a62A1  a.140.3.1 * 2e-15 47.8 %
:RPS:SCOP  49->125 1a62A2  b.40.4.5 * 8e-22 70.1 %
:RPS:SCOP  101->366 1bmfD3  c.37.1.11 * 1e-61 21.9 %
:RPS:SCOP  341->404 1x2lA1  a.35.1.7 * 5e-16 15.6 %
:HMM:SCOP  1->47 1a62A1 a.140.3.1 * 3e-11 53.2 %
:HMM:SCOP  48->125 1a62A2 b.40.4.5 * 4.8e-34 65.4 %
:HMM:SCOP  89->372 1e79A3 c.37.1.11 * 1.9e-73 38.6 %
:RPS:PFM   6->46 PF07498 * Rho_N 2e-05 56.1 %
:RPS:PFM   51->125 PF07497 * Rho_RNA_bind 7e-28 69.9 %
:RPS:PFM   160->359 PF00006 * ATP-synt_ab 2e-10 28.7 %
:HMM:PFM   160->364 PF00006 * ATP-synt_ab 1.8e-43 26.5 200/215  
:HMM:PFM   49->125 PF07497 * Rho_RNA_bind 7.1e-43 71.4 77/78  
:HMM:PFM   5->47 PF07498 * Rho_N 2.3e-17 51.2 43/43  
:BLT:SWISS 1->417 RHO_NEIGO e-179 72.4 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABF09014.1 GT:GENE ABF09014.1 GT:PRODUCT transcription termination factor Rho GT:DATABASE GIB00349CH01 GT:ORG rmet0 GB:ACCESSION GIB00349CH01 GB:LOCATION 2323249..2324511 GB:FROM 2323249 GB:TO 2324511 GB:DIRECTION + GB:PRODUCT transcription termination factor Rho GB:PROTEIN_ID ABF09014.1 GB:DB_XREF GI:93354925 InterPro:IPR000194 InterPro:IPR003593 InterPro:IPR004665 InterPro:IPR011112 InterPro:IPR011113 InterPro:IPR011129 InterPro:IPR013223 LENGTH 420 SQ:AASEQ MHLTELKSLHVSALLEMAATLEIDNAQRMRKQELMFAILKKRAKMGETIYGDGTLEVLPDGFGFLRSPETSYLASTDDIYISPSQIRRFNLHTGDSIEGEVRTPKDGERYFALVKVDKVNGQPPEAVKNRIMFENLTPLHPNRPLTLERDIRAEENITGRIVDIIAPIGRGQRALLVASPKSGKTVMLQHIAHAIANNHPEADLFVLLIDERPEEVTEMQRSVRGEVVASTFDEPAIRHVQVAEMVIEKAKRLVELKRDVVILLDSITRLARAYNTVVPASGKVLTGGVDANALQRPKRFFGAARNLEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINLNKSGTRREELLIKPDILQKIWILRKFISDMDEVQAMEFILDKMKPTKNNAEFFDLMRRGG GT:EXON 1|1-420:0| BL:SWS:NREP 1 BL:SWS:REP 1->417|RHO_NEIGO|e-179|72.4|417/419| BL:PDB:NREP 1 BL:PDB:REP 1->417|1pvoA|e-158|68.1|408/408| RP:PDB:NREP 1 RP:PDB:REP 51->417|2ck3D|2e-72|18.7|359/467| RP:PFM:NREP 3 RP:PFM:REP 6->46|PF07498|2e-05|56.1|41/42|Rho_N| RP:PFM:REP 51->125|PF07497|7e-28|69.9|73/75|Rho_RNA_bind| RP:PFM:REP 160->359|PF00006|2e-10|28.7|195/212|ATP-synt_ab| HM:PFM:NREP 3 HM:PFM:REP 160->364|PF00006|1.8e-43|26.5|200/215|ATP-synt_ab| HM:PFM:REP 49->125|PF07497|7.1e-43|71.4|77/78|Rho_RNA_bind| HM:PFM:REP 5->47|PF07498|2.3e-17|51.2|43/43|Rho_N| GO:PFM:NREP 6 GO:PFM GO:0003715|"GO:transcription termination factor activity"|PF07498|IPR011112| GO:PFM GO:0006353|"GO:transcription termination"|PF07498|IPR011112| GO:PFM GO:0003715|"GO:transcription termination factor activity"|PF07497|IPR011113| GO:PFM GO:0003723|"GO:RNA binding"|PF07497|IPR011113| GO:PFM GO:0006353|"GO:transcription termination"|PF07497|IPR011113| GO:PFM GO:0005524|"GO:ATP binding"|PF00006|IPR000194| RP:SCP:NREP 4 RP:SCP:REP 2->47|1a62A1|2e-15|47.8|46/47|a.140.3.1| RP:SCP:REP 49->125|1a62A2|8e-22|70.1|77/78|b.40.4.5| RP:SCP:REP 101->366|1bmfD3|1e-61|21.9|260/276|c.37.1.11| RP:SCP:REP 341->404|1x2lA1|5e-16|15.6|64/87|a.35.1.7| HM:SCP:REP 1->47|1a62A1|3e-11|53.2|47/0|a.140.3.1|1/1|Rho termination factor, N-terminal domain| HM:SCP:REP 48->125|1a62A2|4.8e-34|65.4|78/78|b.40.4.5|1/1|Nucleic acid-binding proteins| HM:SCP:REP 89->372|1e79A3|1.9e-73|38.6|267/0|c.37.1.11|1/1|P-loop containing nucleoside triphosphate hydrolases| OP:NHOMO 1488 OP:NHOMOORG 793 OP:PATTERN -------------------------------------------------------------------- 1122211111111111111-111111111111111111112111211121121211111111212112222111111111111213221111111111111111111131222222222222222111111111113331111-12-----------------1-------------------11111111222222222222222222212212222222222222222222111111111111111111111-1----1---22-----111-------------------------------------------------22222222222232322222111222111211211222222222222211323211211111224222222322311111111111-33333233332232223342222221222322121122211111111111212322222222211111111111111111111111112123332333353333323332444524233322211223222222113322223222421111111212122223122122133333222222222333331312222122222222222222222221112412222222224232423222322333321-1222212211132233242442222222-43223322224241221121113343344444444444444442122322352455555445454113111111222211523111111111111111111-1111112133232222422222333111111111221132222235222223333333411-111222222222222222222--------------------------2122222222132 -----------------------------------------------1--------1--------------------------------1---11----1----------------------------------------------------------2--------------------------1--------2---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 419 STR:RPRED 99.8 SQ:SECSTR ccHHTcEEEETTccEEEEEEEccccEEEEEcccGGccTTcEEEEcccccccTTcEEEEcccccccEEEEEEEEccETTEEEEEEccccTTccTTcEEEcccEEEccGGGcTcEEcTTccTcccccccccccccccEEEcccccccGGGccccccEEcccHHHHHHccEETTcEEEEEEcTTccHHHHHHHHHHHTTTTcccEEEEEEEEcccHHHHHHHHHcccEEEEEEcTTccHHHHHHHHHHHHHHHHHHHHTTccEEEEEEcTHHHHHHHHHHHGGGTccccGGGccTTHHHHHHHHHTTccccccccEEEEEEEEcGGGcTTcHHHHHHGGGcccEEEEccHHHHTTTccccccTTccEETTcHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHcGGGccHHHHHHHHHHHHH# DISOP:02AL 284-287,420-421| PSIPRED ccHHHHccccHHHHHHHHHHccccccHHccccHHHHHHHHHHHHcccEEEcccEEEEEccccccEEccccccccccccccccHHHHcccccccccEEEEEEEEcccccccccEEEEEccccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccEEEEEcccccccHHHHHHHHHHHHcccccEEEEEEEEEccHHHHHHHHHHccEEEEEEcccccHHHHHHHHHHHHHHHHHHHHccccEEEEEEccHHHHHHHHHHHHHccccccccccccccccHHHHHHcccccccccccEEEEEEEEEcccccccccHHHHHHcccEEEEEEHHHHHccccccccccccHHHccHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHccc //