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Ralstonia metallidurans CH34 (rmet0)
Gene : ABF09027.1
DDBJ      :             transcriptional regulator, LysR family
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  259/915 : Eukaryota  2/199 : Viruses  0/175   --->[See Alignment]
a.4.5c.94.1
:317 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   22->93 1iz1B PDBj 2e-10 55.6 %
:RPS:PDB   22->137 1b9nA PDBj 3e-12 10.4 %
:RPS:PDB   112->304 1al3A PDBj 2e-04 12.1 %
:RPS:SCOP  24->93 1ixcA1  a.4.5.37 * 2e-11 38.5 %
:RPS:SCOP  112->304 1utbA  c.94.1.1 * 8e-06 13.2 %
:HMM:SCOP  22->133 1b9mA1 a.4.5.8 * 9.9e-26 41.9 %
:HMM:SCOP  112->317 2esnA2 c.94.1.1 * 4.4e-25 27.9 %
:RPS:PFM   45->82 PF00126 * HTH_1 2e-04 55.3 %
:HMM:PFM   108->314 PF03466 * LysR_substrate 5.3e-29 29.1 203/209  
:HMM:PFM   24->83 PF00126 * HTH_1 4.3e-23 55.0 60/60  
:BLT:SWISS 44->196 ABGR_ECOLI 5e-15 30.1 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABF09027.1 GT:GENE ABF09027.1 GT:PRODUCT transcriptional regulator, LysR family GT:DATABASE GIB00349CH01 GT:ORG rmet0 GB:ACCESSION GIB00349CH01 GB:LOCATION complement(2341039..2341992) GB:FROM 2341039 GB:TO 2341992 GB:DIRECTION - GB:PRODUCT transcriptional regulator, LysR family GB:PROTEIN_ID ABF09027.1 GB:DB_XREF GI:93354938 InterPro:IPR000847 InterPro:IPR005119 LENGTH 317 SQ:AASEQ MRCGPIIQVQISYRSNAIYAYMNLKRLEHLVAVAEEGSLAAAARRVHLSQPALTRSIQTLEEEAGAVLFDRGTRGVTLTAVGRMVTERARRILFETHCLTRDLTLVRQHEIGSVQIGLGAFPAAMLLPEVLCLLHREWPGLQIATEVSDPRALLDALRAERLDFVVIEQSTVPTLAELEVQRLPEESAGLFVRQGHPLARRPVLLPALREAALVSVVFPPETHERLRKVLRCKPGEALPFQVESNDFRALTYLAKHTDAVLLAPARAVRDETAAGSLVPLDVPGLPAMTMQFAVVRLAQRTLSPAAGRAVAAIEAVA GT:EXON 1|1-317:0| BL:SWS:NREP 1 BL:SWS:REP 44->196|ABGR_ECOLI|5e-15|30.1|153/302| SEG 30->43|lvavaeegslaaaa| SEG 149->163|dpralldalraerld| SEG 197->214|plarrpvllpalreaalv| SEG 305->316|aagravaaieav| BL:PDB:NREP 1 BL:PDB:REP 22->93|1iz1B|2e-10|55.6|72/294| RP:PDB:NREP 2 RP:PDB:REP 22->137|1b9nA|3e-12|10.4|115/258| RP:PDB:REP 112->304|1al3A|2e-04|12.1|190/237| RP:PFM:NREP 1 RP:PFM:REP 45->82|PF00126|2e-04|55.3|38/60|HTH_1| HM:PFM:NREP 2 HM:PFM:REP 108->314|PF03466|5.3e-29|29.1|203/209|LysR_substrate| HM:PFM:REP 24->83|PF00126|4.3e-23|55.0|60/60|HTH_1| GO:PFM:NREP 2 GO:PFM GO:0003700|"GO:transcription factor activity"|PF00126|IPR000847| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF00126|IPR000847| RP:SCP:NREP 2 RP:SCP:REP 24->93|1ixcA1|2e-11|38.5|65/84|a.4.5.37| RP:SCP:REP 112->304|1utbA|8e-06|13.2|189/214|c.94.1.1| HM:SCP:REP 22->133|1b9mA1|9.9e-26|41.9|105/0|a.4.5.8|1/1|"Winged helix" DNA-binding domain| HM:SCP:REP 112->317|2esnA2|4.4e-25|27.9|204/0|c.94.1.1|1/1|Periplasmic binding protein-like II| OP:NHOMO 514 OP:NHOMOORG 261 OP:PATTERN -------------------------------------------------------------------- -------1-----------------2-------11-1122-121----------11------1---43111---------121-----11----11----------------------------------------233-1---1----------------------------------------------1-1-----------------111-------1----------2------------------------11---------111-------------------------------------------------------21-----------1-----------3-----11-1-----------1--------------211-------------------------3------122-------3-11-111--1-11-22---------22-----------------------------------1-2---22148554682111177452122139334988--65321-1-223-41-------2-11111-1-----11-------1-2--------12---1--111---------------------------11212---------1------------3-----------------11231112221211122-2222211222212222221332441211111111111111111333111121-111111111111-----------------2-----------------------1-7-64461554223352--1111111111-------------11--33333121--------------------------------------------------------------1 --------------------------------------------------------------------------------------------------------------------------------------------------------------1-----------------------------1---------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 282 STR:RPRED 89.0 SQ:SECSTR ###################cHEcHHHHHHHHHHHHHccHHHHHHHHTccHHHHHHHHHHHHHHHTcccEEEccccEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHcccccTTcHHHHHHHHTcccTTccEEEEEEEcGGGTcccccccTTHHHHTcccEEHHHHcccccEEEET#EEEccGGGccccTHHHHHHHTTTTTTccccHHHHHTcEEEEEcTTcTTHHHHHHHHHHHTcccEEEEEEccHHHHHHHHHHTccEEEEEGGGcc#TTTcTTcEEEEccT#TcccEEEEEEEETTccccH############# DISOP:02AL 1-2,105-107| PSIPRED cccccEEEEEEccccHHHHHHccHHHHHHHHHHHccccHHHHHHHHccccHHHHHHHHHHHHHHccEEEEEccccEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEEEccHHHHHHHHHHHHHHHHccccEEEEEEccHHHHHHHHHHHccEEEEEEcccccccccEEEEEEEcccEEEEEccccccccccEEHHHHcccEEEEEEcccccHHHHHHHHHHHccccccEEEEEccHHHHHHHHHccccEEEccHHHHHHHHHcccEEEEEcccccccEEEEEEEEccccccccccccHHHHHHHcc //