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Ralstonia metallidurans CH34 (rmet0)
Gene : ABF09254.1
DDBJ      :             cytochrome c, class I
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  183/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
a.3.1
:224 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   46->211 1h1oA PDBj 8e-17 36.1 %
:RPS:PDB   38->151 1c52A PDBj 2e-05 17.9 %
:RPS:PDB   122->210 1cnoG PDBj 3e-14 35.0 %
:RPS:SCOP  46->109 1fcdC1  a.3.1.4 * 9e-12 18.5 %
:RPS:SCOP  83->214 1mg2D  a.3.1.1 * 6e-16 15.0 %
:HMM:SCOP  30->110 1h1oA2 a.3.1.4 * 1.5e-17 37.0 %
:HMM:SCOP  117->211 1h1oA2 a.3.1.4 * 2.3e-22 39.1 %
:HMM:PFM   45->109 PF00034 * Cytochrom_C 5.2e-11 29.2 65/91  
:HMM:PFM   124->211 PF00034 * Cytochrom_C 4.5e-14 31.2 80/91  
:BLT:SWISS 46->211 CYC4_THIRO 1e-19 37.1 %
:REPEAT 2|43->115|140->217
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABF09254.1 GT:GENE ABF09254.1 GT:PRODUCT cytochrome c, class I GT:DATABASE GIB00349CH01 GT:ORG rmet0 GB:ACCESSION GIB00349CH01 GB:LOCATION 2588507..2589181 GB:FROM 2588507 GB:TO 2589181 GB:DIRECTION + GB:PRODUCT cytochrome c, class I GB:PROTEIN_ID ABF09254.1 GB:DB_XREF GI:93355165 InterPro:IPR003088 InterPro:IPR008169 InterPro:IPR009056 LENGTH 224 SQ:AASEQ MSYIADLAPNRGAAIGGTVAPKQQAPAVPDDAPVLVFQGNDIVWACASCHGDHGAGAGLTPALAGLSEAYIAKQLHDFATGSRPNESMRYVASAMSAEEIGQVSAYYAALPHVAGPPVDLGGDAARGEALSRTGDWKKDIPACVTCHGQQGEGVGGHFPALAGQQPEYIFHQLVSWKGGHRHNSPQSLMDDIASRMSDQDMRDVAQYFGSLRPGSKGGNHDEQR GT:EXON 1|1-224:0| BL:SWS:NREP 1 BL:SWS:REP 46->211|CYC4_THIRO|1e-19|37.1|159/192| NREPEAT 1 REPEAT 2|43->115|140->217| SEG 54->66|gagagltpalagl| BL:PDB:NREP 1 BL:PDB:REP 46->211|1h1oA|8e-17|36.1|158/172| RP:PDB:NREP 2 RP:PDB:REP 38->151|1c52A|2e-05|17.9|112/131| RP:PDB:REP 122->210|1cnoG|3e-14|35.0|80/87| HM:PFM:NREP 2 HM:PFM:REP 45->109|PF00034|5.2e-11|29.2|65/91|Cytochrom_C| HM:PFM:REP 124->211|PF00034|4.5e-14|31.2|80/91|Cytochrom_C| RP:SCP:NREP 2 RP:SCP:REP 46->109|1fcdC1|9e-12|18.5|64/80|a.3.1.4| RP:SCP:REP 83->214|1mg2D|6e-16|15.0|120/147|a.3.1.1| HM:SCP:REP 30->110|1h1oA2|1.5e-17|37.0|81/0|a.3.1.4|1/2|Cytochrome c| HM:SCP:REP 117->211|1h1oA2|2.3e-22|39.1|87/0|a.3.1.4|2/2|Cytochrome c| OP:NHOMO 363 OP:NHOMOORG 183 OP:PATTERN -------------------------------------------------------------------- ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------11---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1---1-------35112-1-1-1-------------2---2--2-------2-----11-----2--21221----------1----2-------------------------------------12213233543222225545444445744133212312222444622222222-11111111111223214---------------------------------------------------------4421-121111122222212122222212211---2112----------1--------------------------------------------------------1------------------------1-----1111311------------------------1111133332222122222-------------111122222121221211111-------11--------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 212 STR:RPRED 94.6 SQ:SECSTR ###########cHHTTccTTTcTTHHHHHHHHHHHHccccTTcccHHHHHccGGGGTTTGGGccEEcTTTccEEcHHHHHHHHHHHHHccccccTTcHHHHHHHHHHHHTTTTccccccccccHHHHHHHGGGcccTTTTccTHHHHcTTcccccTTccccTTccHHHHHHHHHHHHTTccccTTHHHHHHHHTTccHHHHHHHHHHHHHHTTTTcTcccccc# DISOP:02AL 1-1,211-225| PSIPRED cccHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHcccccccccHHHHHcccHHHHHHHHHHHHccccccccHHHHHHcccHHHHHHHHHHHHcccccccccccccccHHHHHHHHHcccHHccccHHHHHccccccccHHHccccccccHHHHHHHHHHHHccccccccHHHHHHHHHcccHHHHHHHHHHHHHccccccccccHHcc //