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Ralstonia metallidurans CH34 (rmet0)
Gene : ABF09317.1
DDBJ      :             RNAse E
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  710/915 : Eukaryota  14/199 : Viruses  0/175   --->[See Alignment]
b.40.4d.14.1g.3.5
:1037 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   1->502 2c4rL PDBj e-159 60.9 %
:RPS:PDB   1->502 2c4rL PDBj 9e-50 61.5 %
:RPS:SCOP  39->123 1smxA  b.40.4.5 * 7e-35 70.6 %
:RPS:SCOP  105->193 1a6fA  d.14.1.2 * 6e-16 19.1 %
:RPS:SCOP  389->429 1hykA  g.3.5.1 * 5e-07 12.8 %
:HMM:SCOP  39->124 1smxA_ b.40.4.5 * 5.9e-20 40.7 %
:RPS:PFM   39->117 PF00575 * S1 2e-08 43.5 %
:RPS:PFM   120->390 PF10150 * RNase_E_G 8e-72 55.4 %
:HMM:PFM   120->391 PF10150 * RNase_E_G 8.8e-106 48.1 270/271  
:HMM:PFM   36->117 PF00575 * S1 4.5e-15 29.2 72/74  
:HMM:PFM   400->411 PF00098 * zf-CCHC 0.00088 33.3 12/18  
:HMM:PFM   690->829 PF06375 * BLVR 0.00011 16.0 131/561  
:BLT:SWISS 1->533 RNE_HAEIN e-172 58.1 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABF09317.1 GT:GENE ABF09317.1 GT:PRODUCT RNAse E GT:DATABASE GIB00349CH01 GT:ORG rmet0 GB:ACCESSION GIB00349CH01 GB:LOCATION 2648903..2652016 GB:FROM 2648903 GB:TO 2652016 GB:DIRECTION + GB:PRODUCT RNAse E GB:PROTEIN_ID ABF09317.1 GB:DB_XREF GI:93355228 InterPro:IPR003029 InterPro:IPR004659 LENGTH 1037 SQ:AASEQ MKRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVITRIEPSLEACFVNYGEERHGFLPFKEVARAFFKDGVDVRNARIQDALHEGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRGGGVSRRIEGEDRQELRETMAQLQVPEGMSIIARTAGIGRAAEELQWDLNYLLQLWKAIDGAAGDNKAPLLIYLESSLVIRAIRDYFQPDIGEILIDTDEIYEQARAFMSVVMPDNMSRVKKYRDDVPLFSRFQIEHQIESAYSRMVMLPSGGAIVIDHTEALVSVDVNSARATKGADIEETALRTNLEAADEIARQLRLRDLGGLIVIDFIDMESGKAQKDVETRLKDALRHDRARVQMGKISRFGLMELSRQRLRPSLSEGSHITCPRCNGTGHIRDTESSALQVLRIIQEEAMKENTAAIHCQVPVEVAAFLLNEKRQEINLIELRFKVNVLLIPNKHLETPHYKLERLRHDDPRLEESTASYRMAEAAAKELEADTSYSSRKKEETRPRQEAAVKGITPDAPAPVSVPRPERVRPEAPAARPAPATQPVASGGFIAWLKGLFGAKPATPPEAPAKPAAETPSRGGEGRRERGQRGEGRGEGREGREGREGREGRGQRGERGEQRGDRQGRGQRGERSEQQRGEQREQREPREQRGERPARAPREGQATPAIAQPERAEARQEGRRERSQERRERQRERQRERNEARETDEALSTEAPQLAVGAAQVAPVAAAAAAAAAAAMVAVTTEADTTELPAGVEGAETGEGEERRRRNRRGRNRYRRDRDDTAQNAEGIDGDEANLAEVSAGVTESESESTGFQPAVAEADESVKAVETAVAVTPAEVAPAAPVAPVAPVASEPVFAAVAEPQAAPVVTPAPVETAPVVAAPVAAAPVISEPVIATPDVAPAPVAAPVAAPVAAPVAAPVAAVVETVAVVSAATQVTAAPSAENLEPMLAAAGLEWVRTDGDKHRAAQEAASQIVPAPRVPRERKPLPPLPEGPMVLVETGGVQQAAAQQQQQQQ GT:EXON 1|1-1037:0| BL:SWS:NREP 1 BL:SWS:REP 1->533|RNE_HAEIN|e-172|58.1|530/935| TM:NTM 3 TM:REGION 854->876| TM:REGION 893->915| TM:REGION 929->951| SEG 165->176|iiartagigraa| SEG 539->568|apapvsvprpervrpeapaarpapatqpva| SEG 582->599|akpatppeapakpaaetp| SEG 601->683|rggegrrergqrgegrgegregregregregrgqrgergeqrgdrqgrgqrgerseqqrgeqreqrepreqrgerparapreg| SEG 688->725|aiaqperaearqegrrersqerrerqrerqrerneare| SEG 738->762|avgaaqvapvaaaaaaaaaaamvav| SEG 781->803|gegeerrrrnrrgrnryrrdrdd| SEG 844->964|esvkavetavavtpaevapaapvapvapvasepvfaavaepqaapvvtpapvetapvvaapvaaapvisepviatpdvapapvaapvaapvaapvaapvaavvetvavvsaatqvtaapsa| SEG 1000->1021|prvprerkplpplpegpmvlve| SEG 1026->1036|qqaaaqqqqqq| BL:PDB:NREP 1 BL:PDB:REP 1->502|2c4rL|e-159|60.9|481/491| RP:PDB:NREP 1 RP:PDB:REP 1->502|2c4rL|9e-50|61.5|481/491| RP:PFM:NREP 2 RP:PFM:REP 39->117|PF00575|2e-08|43.5|69/74|S1| RP:PFM:REP 120->390|PF10150|8e-72|55.4|269/271|RNase_E_G| HM:PFM:NREP 4 HM:PFM:REP 120->391|PF10150|8.8e-106|48.1|270/271|RNase_E_G| HM:PFM:REP 36->117|PF00575|4.5e-15|29.2|72/74|S1| HM:PFM:REP 400->411|PF00098|0.00088|33.3|12/18|zf-CCHC| HM:PFM:REP 690->829|PF06375|0.00011|16.0|131/561|BLVR| GO:PFM:NREP 1 GO:PFM GO:0003723|"GO:RNA binding"|PF00575|IPR003029| RP:SCP:NREP 3 RP:SCP:REP 39->123|1smxA|7e-35|70.6|85/87|b.40.4.5| RP:SCP:REP 105->193|1a6fA|6e-16|19.1|89/113|d.14.1.2| RP:SCP:REP 389->429|1hykA|5e-07|12.8|39/46|g.3.5.1| HM:SCP:REP 39->124|1smxA_|5.9e-20|40.7|86/0|b.40.4.5|1/1|Nucleic acid-binding proteins| OP:NHOMO 1029 OP:NHOMOORG 724 OP:PATTERN -------------------------------------------------------------------- 1111111111111111111-1111111111111111111111111111111111111111111111111111111111-----11111111111111--1111111111111111111111111111111111111----------1111111111111111111111111111111111111-------1---11111111111111111----111-----1111111111------------------------------------------------------------------------------------------11111111111111111111111111--111111111111-111111-1-1111221-1111111111111111111111111111-1111111111211111111111111122211111111211111111111112121111111111111111111111111111111111112222222232222222222222222222222221222222222222222222222222222222222222212222111111111122222222211111112-------------------------222222222222222222222222222222221-2222211-11122222222222222222-222222222222212222222222222222222222222222222222222212222222222221122111111111212222222222222122222222222222222222222222222222222222222222222222222222222222222222222111-------------------------------------------1111111111111 --------------------------------------------------------------------------------------------------------------------------------------------------------------1----2------1-------11122--1111-41------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 507 STR:RPRED 48.9 SQ:SECSTR cEEEEEEcccTTcEEEEEEETTEEEEEEEEcccccccTTcEEEEEcccccTTTTccEccccccccccccGGGcccTTccccTTEHHHccHHHHHHHTccTTccccHHHHHHHHHHHHHTTcTTccHHHHHHHHHccHHHHHHHHHHHHcTTcTTHHHccEEcccEEEEEcccccccHHHHHHHHHHHHHcTTcEEEEEEcTTcTTHHHHHHHHHHHHHHHHHHHHGGGGTccHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHTTTEEEGGGcHHHHTcTHHHHHTcccHHHHHHHHHHHHHHHHcEEEEEcTTcEEcccTTTTTTccccTTccHHHHHHHHHHHHHHHHcccTTcccTTGGHHHGccHHHHHHHHHHHHTcccGGHGTcccccccEEcTTccEEETEEEEEEEEEcTTcHHHHHHHHHHHHHHHHHEEEETTccTTccEEEEEETTT###cccccGGGHHHHTcTTc############################################################################################################################################################################################################################################################################################################################################################################################################################################################################################################################################### DISOP:02AL 82-86,488-534,549-561,587-730,776-807,828-833,1027-1038| PSIPRED ccEEEEEEEcccEEEEEEEEccEEEEEEEcccccccccccEEEEEEEEEcccccEEEEEEcccccEEEEHHHccHHHHccccccccccHHHHcccccEEEEEEEEcccccccccccEEEEccccEEEEccccccccEEEEccccHHHHHHHHHHHHHccccccEEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEccccHHHHHHHHHccccccEEEEccHHHHHHHHHHHHHHcHHHHHHHHHccccccHHHHccHHHHHHHHHccccccccccEEEEEccccEEEEEEccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEccccccHHHHHHHHHHHHHHHHHcccccEEcccccccEEEEEEccccccHHHHHccccccccccEEEEcHHHHHHHHHHHHHHHHHHccccEEEEEEcHHHHHHHHcccHHHHHHHHHHHccEEEEEEccccccccEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccHHHHHHHHcccccccHHHHHHHHHHHHHHcHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHEEEEEEEcccccccccccccccccccHHHHHHHHHHHHHHHccccHHHccccccccccccHHHHHHccccccccccccccHHHHHHHHHHHHHHHccccHHHcccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccEEccccHHHHHHHHHHcccEEEEccHHHHHHHHHHHHHcccccccccccccccccccccEEEEEcccHHHHHHHHHHHcc //