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Ralstonia metallidurans CH34 (rmet0)
Gene : ABF09330.1
DDBJ      :             transcriptional regulator, AraC family
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  142/915 : Eukaryota  1/199 : Viruses  0/175   --->[See Alignment]
a.24.16a.4.1b.82.4
:279 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:RPS:PDB   20->140 2arcB PDBj 3e-08 14.3 %
:RPS:PDB   195->272 1bl0A PDBj 3e-10 24.4 %
:RPS:SCOP  16->119 1xjaA  b.82.4.1 * 3e-14 20.6 %
:RPS:SCOP  195->272 1v4aA1  a.24.16.4 * 2e-08 14.1 %
:HMM:SCOP  13->158 2arcA_ b.82.4.1 * 1.5e-25 27.0 %
:HMM:SCOP  170->223 1d5yA1 a.4.1.8 * 6.7e-12 31.5 %
:HMM:SCOP  224->272 1d5yA2 a.4.1.8 * 7.2e-12 38.8 %
:RPS:PFM   22->119 PF02311 * AraC_binding 1e-05 28.6 %
:RPS:PFM   241->270 PF00165 * HTH_AraC 5e-04 40.0 %
:HMM:PFM   16->154 PF02311 * AraC_binding 4.7e-30 32.3 133/136  
:HMM:PFM   181->221 PF00165 * HTH_AraC 8.2e-11 26.8 41/42  
:HMM:PFM   240->271 PF00165 * HTH_AraC 9.4e-07 41.9 31/42  
:BLT:SWISS 9->271 YBFI_BACSU 1e-13 21.2 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABF09330.1 GT:GENE ABF09330.1 GT:PRODUCT transcriptional regulator, AraC family GT:DATABASE GIB00349CH01 GT:ORG rmet0 GB:ACCESSION GIB00349CH01 GB:LOCATION 2664867..2665706 GB:FROM 2664867 GB:TO 2665706 GB:DIRECTION + GB:PRODUCT transcriptional regulator, AraC family GB:PROTEIN_ID ABF09330.1 GB:DB_XREF GI:93355241 InterPro:IPR000005 InterPro:IPR003313 LENGTH 279 SQ:AASEQ MSPQSWIDLRQDASTGIETIRAHFTGHAYDPHWHDSYLVGYTEQGIQQFHCRREVQRSTPGKVFTLEPGEIHDGYAVAPEGFTYSMLYLDAQWMERELRAVFEDAPAHCQPGFAQTLREDPALISAIGSAYTVLQQPELRIVRQSALDALLAQLTAHLHWRAHHAFDPRLPLVAQRARDYLHDHLDHDIGLDDLAAISGVDRYRLTRAFKAAFGIAPHAYLVQMRLARARHLLARGATPADVAVALGFADQSHLGRWFRRAYGLTPAHYRKRCSNLPDA GT:EXON 1|1-279:0| BL:SWS:NREP 1 BL:SWS:REP 9->271|YBFI_BACSU|1e-13|21.2|260/275| SEG 179->194|dylhdhldhdiglddl| SEG 225->237|rlararhllarga| RP:PDB:NREP 2 RP:PDB:REP 20->140|2arcB|3e-08|14.3|119/164| RP:PDB:REP 195->272|1bl0A|3e-10|24.4|78/116| RP:PFM:NREP 2 RP:PFM:REP 22->119|PF02311|1e-05|28.6|98/130|AraC_binding| RP:PFM:REP 241->270|PF00165|5e-04|40.0|30/40|HTH_AraC| HM:PFM:NREP 3 HM:PFM:REP 16->154|PF02311|4.7e-30|32.3|133/136|AraC_binding| HM:PFM:REP 181->221|PF00165|8.2e-11|26.8|41/42|HTH_AraC| HM:PFM:REP 240->271|PF00165|9.4e-07|41.9|31/42|HTH_AraC| GO:PFM:NREP 5 GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF02311|IPR003313| GO:PFM GO:0003700|"GO:transcription factor activity"|PF00165|IPR000005| GO:PFM GO:0005622|"GO:intracellular"|PF00165|IPR000005| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF00165|IPR000005| GO:PFM GO:0043565|"GO:sequence-specific DNA binding"|PF00165|IPR000005| RP:SCP:NREP 2 RP:SCP:REP 16->119|1xjaA|3e-14|20.6|102/165|b.82.4.1| RP:SCP:REP 195->272|1v4aA1|2e-08|14.1|78/151|a.24.16.4| HM:SCP:REP 13->158|2arcA_|1.5e-25|27.0|141/0|b.82.4.1|1/1|Regulatory protein AraC| HM:SCP:REP 170->223|1d5yA1|6.7e-12|31.5|54/54|a.4.1.8|1/2|Homeodomain-like| HM:SCP:REP 224->272|1d5yA2|7.2e-12|38.8|49/0|a.4.1.8|2/2|Homeodomain-like| OP:NHOMO 274 OP:NHOMOORG 143 OP:PATTERN -------------------------------------------------------------------- ----2--------------------2------1--------1--1-------1-------------1332----------1---------------------------------------------------------------1--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1--------------------------------1---2--1--11--233232422421----1------------------1------1------------------------------------22-25333341111122441111-332311-1--111-1---2------------21--------------1----1--13111---------------------------------------1-----32----1-----1111---111121--112-------------1211-3-------------------------------22253-------------------2------------------------------------3-3---------------11311-------44543533254553-2-----------2112111111111111----------------------------------------------------------------------- --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1---------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 213 STR:RPRED 76.3 SQ:SECSTR #####cccEEEETTTTEEETTcTTcccEEETTccccEEEEEEEEEcEEEEETTEEEEEcTTcEEEEcTTccEEEEEcTTcEEEEEEEEEcccGGGGGGGcccEEETTEHHEEEcccTTTHHHHHHHHHHHHHHHTcccTT######################################################HHHccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccHHHHHHTTcccHHHHHHHHHHHHcccHHHHHTc####### DISOP:02AL 1-1,158-172,271-272,274-280| PSIPRED cccHHHccccccccccEEEEEEEEcccccccccccEEEEEEEEccEEEEEEccEEEEEcccEEEEEccccEEEEEEccccccEEEEEEEcHHHHHHHHHHHHHccccccccccccHHcccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHccccccHHHHHHHHcccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccccHHHHHHHcccccHHHHHHHHHHHHcccHHHHHHHHcccccc //