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Ralstonia metallidurans CH34 (rmet0)
Gene : ABF09361.1
DDBJ      :             succinate dehydrogenase subunit A
Swiss-Prot:             

Homologs  Archaea  59/68 : Bacteria  796/915 : Eukaryota  187/199 : Viruses  0/175   --->[See Alignment]
a.7.3c.3.1d.168.1
:592 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   8->592 1nekA PDBj 0.0 55.2 %
:RPS:PDB   8->592 2bs2A PDBj 1e-91 33.5 %
:RPS:SCOP  14->293 1e7pA2  c.3.1.4 * 4e-79 37.3 %
:RPS:SCOP  241->359 3cirM3  d.168.1.1 * 3e-14 46.0 %
:RPS:SCOP  361->433 1chuA2  c.3.1.4 * 2e-06 34.2 %
:RPS:SCOP  456->592 1nekA1  a.7.3.1 * 2e-44 43.1 %
:HMM:SCOP  1->437 1jnrA2 c.3.1.4 * 3.3e-83 39.7 %
:HMM:SCOP  455->592 2bs2A1 a.7.3.1 * 6.5e-51 43.5 %
:RPS:PFM   14->409 PF00890 * FAD_binding_2 2e-99 57.2 %
:RPS:PFM   466->572 PF02910 * Succ_DH_flav_C 5e-30 54.2 %
:HMM:PFM   14->409 PF00890 * FAD_binding_2 5e-119 46.6 373/421  
:HMM:PFM   465->591 PF02910 * Succ_DH_flav_C 5.9e-47 54.0 124/129  
:BLT:SWISS 8->592 DHSA_ECOLI 0.0 55.2 %
:PROS 48->57|PS00504|FRD_SDH_FAD_BINDING
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABF09361.1 GT:GENE ABF09361.1 GT:PRODUCT succinate dehydrogenase subunit A GT:DATABASE GIB00349CH01 GT:ORG rmet0 GB:ACCESSION GIB00349CH01 GB:LOCATION complement(2697552..2699330) GB:FROM 2697552 GB:TO 2699330 GB:DIRECTION - GB:PRODUCT succinate dehydrogenase subunit A GB:PROTEIN_ID ABF09361.1 GB:DB_XREF GI:93355272 InterPro:IPR000205 InterPro:IPR001100 InterPro:IPR003952 InterPro:IPR003953 InterPro:IPR004112 InterPro:IPR011281 InterPro:IPR013027 LENGTH 592 SQ:AASEQ MVAVKTGLPRRKFDVVIVGAGGAGMRASLQLAEAGLNVAVLSKVFPTRSHTVAAQGGIGASLGNMSEDNWHYHFYDTIKGSDWLGDQDAIEFMCREAPKVVYELEHFGMPFDRNADGTIYQRPFGGHTANYGEKPVQRACAAADRTGHALLHTLYQRNVRAKTHFFVEWMALDLIRDEDGDVLGVTALEMETGEVYILEAKTTLFATGGAGRIYAASTNAFINTGDGLGMAARAGVPLEDMEFWQFHPTGVAGAGVLITEGVRGEGGILRNKDGERFMERYAPTLKDLAPRDFVSRSMDQEIKEGRGCGPNGDYVLLDLTHVGAETIMKRLPSIREIGMKFANVDAIKEPIPVVPTIHYQMGGIPTNFHGQVVVPKNGNPNEVVNGFYAIGECSCVSVHGANRLGTNSLLDLVVFGRAAGNHIVANAMKQKEHKPLPADAADRAMARLAKLQGTTSGEYTQDVANDIRRNMQSHAGVFRTQKLMDEGVERILEVAERANNIHLKDKSKVFNTALVEALEVSNLVEVAKATMISAAARKESRGAHAHSDFPNRDDENWLKHTLFYSEGNRLDYKPVKMQPLTVESVPPKARTF GT:EXON 1|1-592:0| BL:SWS:NREP 1 BL:SWS:REP 8->592|DHSA_ECOLI|0.0|55.2|585/588| PROS 48->57|PS00504|FRD_SDH_FAD_BINDING|PDOC00393| SEG 435->449|plpadaadramarla| BL:PDB:NREP 1 BL:PDB:REP 8->592|1nekA|0.0|55.2|585/588| RP:PDB:NREP 1 RP:PDB:REP 8->592|2bs2A|1e-91|33.5|571/655| RP:PFM:NREP 2 RP:PFM:REP 14->409|PF00890|2e-99|57.2|369/375|FAD_binding_2| RP:PFM:REP 466->572|PF02910|5e-30|54.2|107/114|Succ_DH_flav_C| HM:PFM:NREP 2 HM:PFM:REP 14->409|PF00890|5e-119|46.6|373/421|FAD_binding_2| HM:PFM:REP 465->591|PF02910|5.9e-47|54.0|124/129|Succ_DH_flav_C| GO:PFM:NREP 4 GO:PFM GO:0009055|"GO:electron carrier activity"|PF00890|IPR003953| GO:PFM GO:0016491|"GO:oxidoreductase activity"|PF00890|IPR003953| GO:PFM GO:0016491|"GO:oxidoreductase activity"|PF02910|IPR004112| GO:PFM GO:0055114|"GO:oxidation reduction"|PF02910|IPR004112| RP:SCP:NREP 4 RP:SCP:REP 14->293|1e7pA2|4e-79|37.3|279/336|c.3.1.4| RP:SCP:REP 241->359|3cirM3|3e-14|46.0|63/64|d.168.1.1| RP:SCP:REP 361->433|1chuA2|2e-06|34.2|71/251|c.3.1.4| RP:SCP:REP 456->592|1nekA1|2e-44|43.1|137/138|a.7.3.1| HM:SCP:REP 1->437|1jnrA2|3.3e-83|39.7|302/357|c.3.1.4|1/1|FAD/NAD(P)-binding domain| HM:SCP:REP 455->592|2bs2A1|6.5e-51|43.5|138/0|a.7.3.1|1/1|Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain| OP:NHOMO 2253 OP:NHOMOORG 1042 OP:PATTERN 11-1-12222122222-2112211322332121111111111111111-----111111111111-21 2322512111111234444-45223444444344553354233223222111332314--334233345321111222-42222222222222222---21311121233111-11111111111333333333332222211-412223222222222211122223233122122221112221222212222222222222222222222222222222122222221221111111111111112111111-1111-2111111-1--111-111-----------------------------------11---111-253111111111-11112211112311-21123441231133----1-2-222222211111233352322222211111111112-43233334242122232222222224222122212312211111111222-23221121111121111111111111111111112222111113333333222224423222212322332322443222222222333232221332222222222223231222222322231323442222333334252221122221112111111134434113332222222345555265444545546551-12232------33442433333333333-333333333333233333333343332333333333333333332232222213333333333331122222222222222121111111111-11113333322222233323323223223222222222222223333333333333311111111112222113-332222------------------------------------------1---222 11--112-642-1123233122123212211111212232222222222111111111121212222112312114424512244211-12121172121211323-1122211122111-12-121224d1-4421111111---111111111221113215143411962211223u4342232642323243331 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 590 STR:RPRED 99.7 SQ:SECSTR ##HHHccccEEEccEEEEcccHHHHHHHHHHHTTTccEEEEccccGGGcGGGGccccEEccccccGGccHHHHHHHHHHHTTTcccHHHHHHHHHHHHHHHHHHHHTTccccccccEEEEcccccccccccTTcccccEEccTTcHHHHHHHHHHHHHHHHTcEEEccEEEEEEEEETTEEEEEEEEETTTTccEEEEEccEEEEcccccGGGcccccccTTcccHHHHHHHTTccccEEcTTcEEEEcccTTTcccccTHHHHHTcEEEcTTccccHHHHcTTTGGGccHHHHHHHHHHHHHTTTccccTcccEEEEcGGGcHHHHHHHcHHHHHHHHHTccccTTTccEEEccEEEEEccEEEccTTccccccTTcTTccEEETEEEcGGGEEccccTTcccTTHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHTTcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccTTcccTTcccEETTTccEEEEEEcccTEEEEEEccGGGccccccccccccc DISOP:02AL 1-5,432-434| PSIPRED ccccccccccEEEEEEEEcccHHHHHHHHHHHHcccEEEEEEccccccccEEcccccccccccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHccccccccccccEEccccccccccccccccccEEEcccccHHHHHHHHHHHHHHcccEEEEEEEEEEEEEEcccEEEEEEEEEcccccEEEEEccEEEEEcccHHHccccccccccccHHHHHHHHHccccEEcccEEEEEEEEEcccccEEEcccccccEEEEcccccccHHHccHHHcccccHHHHHHHHHHHHHHcccccccccEEEEEcccccHHHHHHHHHHHHHHHHHHcccccccccEEEEccccEEEccEEEccccEEccccccccccccccEEEEHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHcccEEEcHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEcccccccccHHHccEEEEEEEccEEEEccEEEEEEEEEEEccccccc //