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Ralstonia metallidurans CH34 (rmet0)
Gene : ABF09396.1
DDBJ      :             DNA topoisomerase IV subunit A
Swiss-Prot:             

Homologs  Archaea  22/68 : Bacteria  910/915 : Eukaryota  190/199 : Viruses  9/175   --->[See Alignment]
b.68.10e.11.1
:776 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   38->770 1zvuA PDBj e-134 43.2 %
:RPS:PDB   37->515 1ab4A PDBj e-129 43.7 %
:RPS:PDB   522->619 3dwpB PDBj 3e-19 14.3 %
:RPS:SCOP  37->515 1ab4A  e.11.1.1 * e-130 43.7 %
:RPS:SCOP  530->758 1suuA  b.68.10.1 * 4e-36 20.2 %
:HMM:SCOP  16->519 1bjtA_ e.11.1.1 * 2.2e-150 53.8 %
:HMM:SCOP  530->766 1suuA_ b.68.10.1 * 2.2e-45 29.1 %
:RPS:PFM   38->484 PF00521 * DNA_topoisoIV e-110 55.6 %
:RPS:PFM   465->509 PF08295 * HDAC_interact 4e-04 36.4 %
:HMM:PFM   38->489 PF00521 * DNA_topoisoIV 4.6e-134 48.0 417/426  
:HMM:PFM   675->719 PF03989 * DNA_gyraseA_C 3.5e-05 24.4 45/50  
:BLT:SWISS 14->758 PARC_NEIGO 0.0 55.3 %
:COIL
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABF09396.1 GT:GENE ABF09396.1 GT:PRODUCT DNA topoisomerase IV subunit A GT:DATABASE GIB00349CH01 GT:ORG rmet0 GB:ACCESSION GIB00349CH01 GB:LOCATION complement(2735047..2737377) GB:FROM 2735047 GB:TO 2737377 GB:DIRECTION - GB:PRODUCT DNA topoisomerase IV subunit A GB:PROTEIN_ID ABF09396.1 GB:DB_XREF GI:93355307 InterPro:IPR002205 InterPro:IPR005742 InterPro:IPR006691 LENGTH 776 SQ:AASEQ MDQPDITFQADEPADSLTLARYAERAYLDYAVSVVKGRALPEVADGQKPVQRRILFAMQAMGLRADAKPVKSARVVGEVLGKFHPHGDQSAYDALVRLAQDFSLRYPLIDGQGNFGSRDGDGAAAMRYTEARLTPISRLLLDEIDMGTVDFLPNYDGSEEEPKLLPARLPFVLLNGASGIAVGMATEIPPHNLREVAGATVAMIRNPNISLADLLALMPGPDYPGGGQIISPASEIAQIYESGRGSLKVRARWTIEEMARGQWQMVVTELPPGTSAQKVLEEIEEITNPKIRTGKKALTPEQTQLKTTMLSVLDAVRDESGKDAPVRLVFEPKSKNTEQQDFIQTLLAHTSLESGAPINLVMIGTDGRPRQKGLQEILREWIEFRFATVTRRTRFQLTKVEDRIHILEGRMLVLLNIDEVIRIIRESDEPKPALIEAFRLSDRQAEDILEIRLRQLARLEAIKIEQELAKLRDEQAELDVLLKSETMMRRRIIKEIEQDAKQYSPEDKDPRRTLIQEASRAAAEVKVIDEPVTVIVSGKGWVRTRQGHGHDASQFTFKAGDNLYGTFECRTIDTLLAFGSNGRVYSVAVSGLPGGRGDGVPVTTLIDLAAGTQIAHTFAGAAEQRMLIATAGGNGFVTKVGDMIGRQKAGKAFVTLDEGDTLLAPTPIGEECTHVACFSANGRLLLAGLDEVKVLSAGGRGVILMELEPKETLMQAVAVGAPGLMISGIGVRGGKVPPQKLAGKTLIPYVGKRARKGKAIEPRLKEVKIEPVKVGE GT:EXON 1|1-776:0| BL:SWS:NREP 1 BL:SWS:REP 14->758|PARC_NEIGO|0.0|55.3|730/768| COIL:NAA 34 COIL:NSEG 1 COIL:REGION 451->484| SEG 384->395|frfatvtrrtrf| BL:PDB:NREP 1 BL:PDB:REP 38->770|1zvuA|e-134|43.2|672/685| RP:PDB:NREP 2 RP:PDB:REP 37->515|1ab4A|e-129|43.7|442/477| RP:PDB:REP 522->619|3dwpB|3e-19|14.3|98/117| RP:PFM:NREP 2 RP:PFM:REP 38->484|PF00521|e-110|55.6|421/434|DNA_topoisoIV| RP:PFM:REP 465->509|PF08295|4e-04|36.4|44/101|HDAC_interact| HM:PFM:NREP 2 HM:PFM:REP 38->489|PF00521|4.6e-134|48.0|417/426|DNA_topoisoIV| HM:PFM:REP 675->719|PF03989|3.5e-05|24.4|45/50|DNA_gyraseA_C| GO:PFM:NREP 5 GO:PFM GO:0003677|"GO:DNA binding"|PF00521|IPR002205| GO:PFM GO:0003918|"GO:DNA topoisomerase (ATP-hydrolyzing) activity"|PF00521|IPR002205| GO:PFM GO:0005524|"GO:ATP binding"|PF00521|IPR002205| GO:PFM GO:0005694|"GO:chromosome"|PF00521|IPR002205| GO:PFM GO:0006265|"GO:DNA topological change"|PF00521|IPR002205| RP:SCP:NREP 2 RP:SCP:REP 37->515|1ab4A|e-130|43.7|442/477|e.11.1.1| RP:SCP:REP 530->758|1suuA|4e-36|20.2|213/293|b.68.10.1| HM:SCP:REP 16->519|1bjtA_|2.2e-150|53.8|452/760|e.11.1.1|1/1|Type II DNA topoisomerase| HM:SCP:REP 530->766|1suuA_|2.2e-45|29.1|230/0|b.68.10.1|1/1|GyrA/ParC C-terminal domain-like| OP:NHOMO 1995 OP:NHOMOORG 1131 OP:PATTERN -----------------------111111111-----------1111111111--------111---- 1111211111111111112-12111211111122221111211122222222222222222222221222222222221111111111222212222112222222222222222222222222211111111111111111111122222222222222222222222222222222222221111111112222222222222222222222222222212222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222212122222222222221222222222111221122111121111111111112222222222222222222222222222222222-22223222222222222222222222222222222222222222222222222221111111111112222222222222111112222222222222222222222222222222232222222222222222222222221121222222222111222112121111111111111111111111122111111111111111111111111111222222222222222222222222222222221-2222211111122222222222222222-22222222222222222222222222222222222222222222222222221222222222222112222222222222222222222222112222222122222222222222222222222222222222222222222222222222222222222222222212222222222222221211112-22222222222222222231111111111122 221122116221112111111111111111111111111121111111111111111111111-1111-111111111111-111111-12111111111121111115222223341221222221319I2-42621-121223222121123-422113912121111-44-13222F2232232131233443222 ---1---------------1---------------111-1----------------------------------------------------------------------------------------------------------------------------------111-- STR:NPRED 755 STR:RPRED 97.3 SQ:SECSTR ##########ccHHHHHHHHHHHHTTcccccHHHHHTTTcccTTTcccHHHHHHHHHHHHTTcccccccEEHHHHHHHHHHHTccccHHHHHHHHHHTTcTTTcccccEEEEcccccTTccccccTTTcEEEEcTTHHHHcTTTTTTcccEEEcTTcccEEEccccccccHHHHHcEEEccccccEEEccccHHHHHHHHHHHHHcTTccHHHHTTTccccccccccEEcccGHHHHHHHHHcEEEEEEEcEEEEEccEEETTEEEEEEccTTccHHHHHHHHHHHHTTTccccHHHHHHHHHcccTTcccccccEEEcccccccccEEEccHHcEEHHHHHHHHHHHHcTTEEEEEEEcEEEETTTEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHcccHHHHHHHEEEccHHHHHHHHTccGGGGcHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHcEEETcccccEEHHHHHHHHHHHHHHHccEEEEccGGGHHHHHHHTTTcTTcEEEEEcccccGGGGGGcHHHHccccEEEEEETTTTGGGTccHHHHHHHHHHHHccccccHHHHHcHHHHHHHTcccTTcEEccccTTcccccccHHHHHHHHHHHHHHHHHHHHHHTccGGGccHHHHHHHHTccTccccccccccEEcccccHHHHEEEEEEEcccccEEEEETTEEEEEcHHHHTTcc#####ccTTcccEEcTccccEEEEc###### DISOP:02AL 1-12,15-15,545-557,770-777| PSIPRED ccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccHHHHcccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccEEEccccccccccccccccHHHHHHHHHHHHHHHHHccccccccccccccccccccEEEcccccEEEEEccccEEEccccccccccHHHHHHHHHHHHccccccHHHHHHHccccccccccEEEccHHHHHHHccccccEEEEEEEEEEEEEccccEEEEEEcccccccHHHHHHHHHHHHHccccccccccccHHHHHcccccccHHHHHccccccccEEEEEEEccccccHHHHHHHHHHHcccEEEEEEEEEEEEcccEEEEEcHHHHHHHHHHcEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHcccccccccEEEEEcccccHHHccccccEEEEEcccccEEEEccccccccccccccccEEEEEEEEEcccEEEEEEccccEEEEEHHHccccccccEEEHHHcccccccEEEEEEEEccccEEEEEEcccEEEEEEHHHHcccccccEEEEEcccccEEEEEEEEcccccEEEEEEccccEEEEEHHHccccccccccEEEEEEccccEEEEEEEEccccEEEEEEEcccccccccccccccHHHHHHHccccccccccccEEcccccEEccc //