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Ralstonia metallidurans CH34 (rmet0)
Gene : ABF09433.1
DDBJ      :             Integrase, catalytic region
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  86/915 : Eukaryota  2/199 : Viruses  0/175   --->[See Alignment]
c.55.3
:278 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   140->227 3hphD PDBj 6e-04 33.3 %
:RPS:PDB   112->271 1bisB PDBj 3e-07 14.0 %
:RPS:SCOP  183->271 1b92A  c.55.3.2 * 9e-05 12.7 %
:HMM:SCOP  102->272 1asuA_ c.55.3.2 * 3.8e-24 23.7 %
:RPS:PFM   183->227 PF00665 * rve 1e-05 40.0 %
:HMM:PFM   108->229 PF00665 * rve 5.6e-25 29.1 117/120  
:BLT:SWISS 8->272 YI2A_ECOLX 3e-86 58.1 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABF09433.1 GT:GENE ABF09433.1 GT:PRODUCT Integrase, catalytic region GT:DATABASE GIB00349CH01 GT:ORG rmet0 GB:ACCESSION GIB00349CH01 GB:LOCATION complement(2780001..2780837) GB:FROM 2780001 GB:TO 2780837 GB:DIRECTION - GB:PRODUCT Integrase, catalytic region GB:PROTEIN_ID ABF09433.1 GB:DB_XREF GI:93355344 InterPro:IPR001584 LENGTH 278 SQ:AASEQ MKTVCDVLGVARSAVAAKQARSSEWRDGRRARQYDDTALVAEIHELVAGLPTYGYRRVWALLRRSHELSGASPVNAKRVYRVMHDHQLLLRRPGRRLDTRRHDGRVAVDRSNTRWCSDGFEFRCDDGSPLRVTFALDCHDREAISWAATTGGHSGDIVRDVMLAAVEQRFGAVQTEQTIEWLSDNGSAYIDHRTRSFARELGLEPLTTPVRSPQSNGMAESFVKTMKRDYIAFMNKPDVPTALSQLTVAFEQYNDWHPHKALKYRSPREFRRAATSST GT:EXON 1|1-278:0| BL:SWS:NREP 1 BL:SWS:REP 8->272|YI2A_ECOLX|3e-86|58.1|265/424| SEG 88->101|lllrrpgrrldtrr| BL:PDB:NREP 1 BL:PDB:REP 140->227|3hphD|6e-04|33.3|81/196| RP:PDB:NREP 1 RP:PDB:REP 112->271|1bisB|3e-07|14.0|143/154| RP:PFM:NREP 1 RP:PFM:REP 183->227|PF00665|1e-05|40.0|45/116|rve| HM:PFM:NREP 1 HM:PFM:REP 108->229|PF00665|5.6e-25|29.1|117/120|rve| GO:PFM:NREP 2 GO:PFM GO:0003677|"GO:DNA binding"|PF00665|IPR001584| GO:PFM GO:0015074|"GO:DNA integration"|PF00665|IPR001584| RP:SCP:NREP 1 RP:SCP:REP 183->271|1b92A|9e-05|12.7|79/144|c.55.3.2| HM:SCP:REP 102->272|1asuA_|3.8e-24|23.7|152/0|c.55.3.2|1/1|Ribonuclease H-like| OP:NHOMO 532 OP:NHOMOORG 88 OP:PATTERN -------------------------------------------------------------------- 1--7---B--1-----------------------------------------------------------------------------------------------------------------4----------------14------------------------------------------------1--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1---------------1-----------------1---2----5-----33-----132A-2---5---31-4--------------2---------------------------------1---------11326-7----111-----18-2----4----B-----1---------1-------------5--------2---1--4-------A-------1--------------------------2-------1---------------------------------------------6223B1156--2-618--12-221--A11-214---------------------1kiVdWYj-------------------------------------------------------------1----1------------------------------------------1-----------------------------------------------------H--------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1-1---------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 163 STR:RPRED 58.6 SQ:SECSTR ###########################################################################################################ccccTTEEEEEEEEETTE#ETTEEEEEEEETTTccEEEEEEccccHHHHHHHccHHHHHHHHHHHHHHccccEEEccccTTTccHHHHHHHHHHTcEEEccccccccHHHHHHHHHHHHHHHHHHHHGGGcccHHHHHHHHHHHHHHHHccGGGcccccHHHHH####### DISOP:02AL 24-33,96-105,276-279| PSIPRED cHHHHHHHcccHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHcccccccccccHHHHHHHHHHccccccccccHHHcccccccccccccccEEEEEEEEcccccccEEEEEEEEEcccccEEEEEEcccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHcccEEEEccccccccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccccHHcccccHHHHHHHHHHcc //