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Ralstonia metallidurans CH34 (rmet0)
Gene : ABF09441.1
DDBJ      :             DEAD/DEAH box helicase-like protein
Swiss-Prot:             

Homologs  Archaea  52/68 : Bacteria  833/915 : Eukaryota  198/199 : Viruses  1/175   --->[See Alignment]
c.37.1
:634 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   51->415 2i4iA PDBj 4e-63 43.7 %
:RPS:PDB   29->419 3bxzB PDBj 2e-65 13.2 %
:RPS:SCOP  61->417 1pjrA1  c.37.1.19 * 2e-52 11.8 %
:HMM:SCOP  12->233 1a1vA2 c.37.1.14 * 1e-19 45.5 %
:HMM:SCOP  137->428 1wp9A2 c.37.1.19 * 7.6e-74 40.7 %
:RPS:PFM   73->254 PF00270 * DEAD 1e-36 50.9 %
:RPS:PFM   334->404 PF00271 * Helicase_C 2e-16 52.1 %
:HMM:PFM   73->257 PF00270 * DEAD 3.6e-52 44.8 163/167  
:HMM:PFM   329->405 PF00271 * Helicase_C 1.2e-29 48.1 77/78  
:BLT:SWISS 51->448 RHLE_ECOLI 5e-83 45.7 %
:PROS 218->226|PS00039|DEAD_ATP_HELICASE
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABF09441.1 GT:GENE ABF09441.1 GT:PRODUCT DEAD/DEAH box helicase-like protein GT:DATABASE GIB00349CH01 GT:ORG rmet0 GB:ACCESSION GIB00349CH01 GB:LOCATION 2787819..2789723 GB:FROM 2787819 GB:TO 2789723 GB:DIRECTION + GB:PRODUCT DEAD/DEAH box helicase-like protein GB:PROTEIN_ID ABF09441.1 GB:DB_XREF GI:93355352 InterPro:IPR000629 InterPro:IPR001410 InterPro:IPR001650 InterPro:IPR011545 LENGTH 634 SQ:AASEQ MTQHDFRAEQPIASATDAFATPADAASPLDKLDAMLNADAAPAVEASENGFAKLGLDAAILRALAEANYNTPTPVQAQAIPAFLAGRDLLVSSQTGSGKTAAFMLPAIQRISEKPATHRPTEPAKRMKGKRPRPSPAQPSLLVLTPTRELALQVTEAAAKYGRHLRRIVCASILGGMPYPKQLAMLARMPDILVATPGRLLDHIEAGRIDLSALEMLVFDEADRMLDMGFADDIDAIVAATPASRQTLMFSATLDARIAQLASRQLRDPQRIEIAAARADHSNIEQRLHFTDDMSHKERLLDHLLRDASLKQAIVFTATKRDADSLAERLSDTGFSAGALHGDMTQGARNRTLTALRRGNLRVLVATDVAARGIDVPDITHVVNFDLPKQAEDYVHRIGRTGRAGRSGVAINLVNHGDMFQWRRIERFTNNRIDASVIEGFEPRRSPKPRSNFGGKPGGRDGFRGNGGTGGGYRGNNGSGGYRGNREGSGDRNFGERRFSSDNRGFGDRAPRPFGDDNRGGFGDRGERGFGDRSNGNSNGGYRGQGQGQGQGQAQQRSFGGERSFGNRDFAQRDGNRDATQRDGNRSFGGNRDGQRDGNRSFGDRSFGDRKFGDRGGDRGGFGGQRNSRSRYER GT:EXON 1|1-634:0| BL:SWS:NREP 1 BL:SWS:REP 51->448|RHLE_ECOLI|5e-83|45.7|381/454| PROS 218->226|PS00039|DEAD_ATP_HELICASE|PDOC00039| SEG 13->28|asatdafatpadaasp| SEG 452->490|nfggkpggrdgfrgnggtgggyrgnngsggyrgnregsg| SEG 514->561|fgddnrggfgdrgergfgdrsngnsnggyrgqgqgqgqgqaqqrsfgg| SEG 589->600|ggnrdgqrdgnr| SEG 602->624|fgdrsfgdrkfgdrggdrggfgg| BL:PDB:NREP 1 BL:PDB:REP 51->415|2i4iA|4e-63|43.7|350/408| RP:PDB:NREP 1 RP:PDB:REP 29->419|3bxzB|2e-65|13.2|365/440| RP:PFM:NREP 2 RP:PFM:REP 73->254|PF00270|1e-36|50.9|161/167|DEAD| RP:PFM:REP 334->404|PF00271|2e-16|52.1|71/76|Helicase_C| HM:PFM:NREP 2 HM:PFM:REP 73->257|PF00270|3.6e-52|44.8|163/167|DEAD| HM:PFM:REP 329->405|PF00271|1.2e-29|48.1|77/78|Helicase_C| GO:PFM:NREP 6 GO:PFM GO:0003676|"GO:nucleic acid binding"|PF00270|IPR011545| GO:PFM GO:0005524|"GO:ATP binding"|PF00270|IPR011545| GO:PFM GO:0008026|"GO:ATP-dependent helicase activity"|PF00270|IPR011545| GO:PFM GO:0003676|"GO:nucleic acid binding"|PF00271|IPR001650| GO:PFM GO:0004386|"GO:helicase activity"|PF00271|IPR001650| GO:PFM GO:0005524|"GO:ATP binding"|PF00271|IPR001650| RP:SCP:NREP 1 RP:SCP:REP 61->417|1pjrA1|2e-52|11.8|313/315|c.37.1.19| HM:SCP:REP 12->233|1a1vA2|1e-19|45.5|123/299|c.37.1.14|1/2|P-loop containing nucleoside triphosphate hydrolases| HM:SCP:REP 137->428|1wp9A2|7.6e-74|40.7|270/0|c.37.1.19|1/1|P-loop containing nucleoside triphosphate hydrolases| OP:NHOMO 11238 OP:NHOMOORG 1084 OP:PATTERN ---2-1223323333112--1--21--121-11111111111132232142232---2122221--12 1331433333332332322-25113422222243334555-52543533775545523--5533444685222223331141-11111766625443--6386748A937--------------2321343334231112111121332332211112323313214455311111111111151221--1135666666665666666436656666322535466666675333333333333333333435443553434344444434344223333333333333333333323333333333333333333333333-624766666667673522555545-2-122127555-1111----1-214-6434422213333444224433333333333333-4444444424524553434333433434544254455435555555546664333------------111111111111111111333325555466666665555667755654566655562455555655686654664463364333323253255584726263225333-555545665444487524--1-------1111111116111633BB8756D79BBBFEEEEEEEEEECEEDEDD1-2232311111165666666777667676-76668666877576666666666656666666666666565566666666751655667755667114522222444437559434344344344444222222222257786778877677777683222222226CCCBAAAAAADDCC44666666663333234-443333--------21322232---1--12---11121-11111111------35 TTNOYUT4*RPLTSVOQRQOOOOPPOPOOPPPPNNNPPNNNNNOONRRRRRQUTRRRSPQPPOPONOOHPONNOPOPKPQOOMNNMMO-NcQQSSVSOPOQPSbfdBX*W*lwkpkwZWXTYdVzvT*V**m3vk*UYZUpXbiVTabWTdTNyVjZVab*vibXUYlaf*kpkTMcdj*hfeScwo**T*tcbeZacg --------------------------------------------------------------------------------------------------------------------------------------------------------------------------2---- STR:NPRED 423 STR:RPRED 66.7 SQ:SECSTR ############################ccHHHHHTHHHHHHHHHHTTccGGGcHHHHHHHHHHHHHHHTcccccHHHHHHHHHTTTTEEEEccTTccHHHHTHHHHHHHTTccccEEccEEccHHHHHHHTcTTccTccEEEEEccHHHHHHHHHTTHHHHHHTTTccEEEccTTccHHHHHHHHHccEEEEEHHHHHHHHHHccccccEEEEETHHHHHTTcccccEEccEEccTTTGGGcccEEEEEEccccTTccHHHHHcccEEEEcccccccccEEcccEEEccHHHHHHHHHHHEHHHHHHHTccEEEEcccHHHHHHHHHHHHHTcccccEEccccHHHHHHHHTTTTccccEEEEcTTccTTccccTTTccEEEEccccccTTHHHHHHHTccGGGcccEEEEEEEHHHHHHHHHHHHHTTcccHHHHHHHHHHHccGGccc####################################################################################################################################################################################### DISOP:02AL 1-5,7-8,40-42,44-45,440-459,479-515,531-563,573-600,621-635| PSIPRED ccccccHHHcHHHHHHHHcccccccccccHHHHcccccccccccccccccHHHccccHHHHHHHHHcccccccHHHHHHHHHHHccccEEEEEcccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccEEEEEcccHHHHHHHHHHHHHHHHHccccEEEEEEccccHHHHHHHHHccccEEEEccHHHHHHHHcccccccccEEEEEEccHHHHccccHHHHHHHHHHcccHHcEEEEEccccHHHHHHHHHHccccEEEEEccccccccccEEEEEEcccHHHHHHHHHHHHHHccccEEEEEEccHHHHHHHHHHHHHccccEEEEcccccHHHHHHHHHHHHcccccEEEEccHHHcccccccccEEEEccccccHHHHccccccccccccccEEEEEEcHHHHHHHHHHHHHHcccccHHHccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccccccHHHHHcccccHHcccccccccccccccccccccccccccccccccccccccccccccccccHHccc //