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Ralstonia metallidurans CH34 (rmet0)
Gene : ABF09459.1
DDBJ      :             DEAD/DEAH box helicase-like protein
Swiss-Prot:             

Homologs  Archaea  51/68 : Bacteria  828/915 : Eukaryota  198/199 : Viruses  1/175   --->[See Alignment]
c.37.1
:556 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   69->446 2db3A PDBj 2e-69 38.4 %
:RPS:PDB   69->435 3bxzB PDBj 7e-67 10.5 %
:RPS:SCOP  85->430 1pjrA1  c.37.1.19 * 4e-52 11.1 %
:HMM:SCOP  85->172 1qhh.1 c.37.1.19 * 0.00048 29.1 %
:HMM:SCOP  148->441 1wp9A2 c.37.1.19 * 1.9e-78 43.6 %
:RPS:PFM   97->263 PF00270 * DEAD 1e-36 46.9 %
:RPS:PFM   343->417 PF00271 * Helicase_C 2e-20 56.0 %
:HMM:PFM   97->271 PF00270 * DEAD 2e-56 47.9 167/167  
:HMM:PFM   342->418 PF00271 * Helicase_C 8.9e-30 51.9 77/78  
:HMM:PFM   258->330 PF00883 * Peptidase_M17 0.00074 21.4 70/311  
:BLT:SWISS 74->457 RHLE_ECOLI 5e-97 50.4 %
:PROS 228->236|PS00039|DEAD_ATP_HELICASE
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABF09459.1 GT:GENE ABF09459.1 GT:PRODUCT DEAD/DEAH box helicase-like protein GT:DATABASE GIB00349CH01 GT:ORG rmet0 GB:ACCESSION GIB00349CH01 GB:LOCATION complement(2806056..2807726) GB:FROM 2806056 GB:TO 2807726 GB:DIRECTION - GB:PRODUCT DEAD/DEAH box helicase-like protein GB:PROTEIN_ID ABF09459.1 GB:DB_XREF GI:93355370 InterPro:IPR000629 InterPro:IPR001410 InterPro:IPR001650 InterPro:IPR011545 LENGTH 556 SQ:AASEQ MLLTSQAPILASVRDDRARAVMVESKSLIFRAIHPLSGLSSRRVSDCDGFAPCTDTSTMTMTTTQDQAPAAEQTFESFGLDPRILRALTEQGYTKPTPIQAQAIPVVLLGKDVMGAAQTGTGKTAGFALPIIQRLLPLANASASPARHPVRALMLTPTRELADQVYDNVARYAKHTDLRSTVVFGGVDMNPQTDALRRGVEILVATPGRLLDHVQQKSVNLSQVQMLVLDEADRMLDMGFLPDLQRIINLLPAQRQTLLFSATFSPEIKKLASSYLKQPVTIEVARSNSTNENVRQVVYQVQDGHKQAAVVHLLKQRANEQQSRQCIVFVNSKIGCSRLARHLEREGINAAAIHGDKTQTERMQTLDGFKNGTIDALVATDVAARGLDIPAMPCVINFDLPFSAEDYVHRIGRTGRAGASGDALSIFVPGNDDRLLADIEKLIKRSIPRGSLDGFDPTGERARQEDSDRRRARTEVRRVRDNGEGEEQQRRRRTEPNGRQAFRPSDDPFFSRPYEPSGSYTPAPKTEEQLAAALTRGRQAPKRPVAALLGGVPRKS GT:EXON 1|1-556:0| BL:SWS:NREP 1 BL:SWS:REP 74->457|RHLE_ECOLI|5e-97|50.4|377/454| PROS 228->236|PS00039|DEAD_ATP_HELICASE|PDOC00039| SEG 54->67|tdtstmtmtttqdq| SEG 115->128|gaaqtgtgktagfa| SEG 135->146|llplanasaspa| SEG 469->480|rrrartevrrvr| SEG 483->495|gegeeqqrrrrte| BL:PDB:NREP 1 BL:PDB:REP 69->446|2db3A|2e-69|38.4|370/420| RP:PDB:NREP 1 RP:PDB:REP 69->435|3bxzB|7e-67|10.5|351/440| RP:PFM:NREP 2 RP:PFM:REP 97->263|PF00270|1e-36|46.9|160/167|DEAD| RP:PFM:REP 343->417|PF00271|2e-20|56.0|75/76|Helicase_C| HM:PFM:NREP 3 HM:PFM:REP 97->271|PF00270|2e-56|47.9|167/167|DEAD| HM:PFM:REP 342->418|PF00271|8.9e-30|51.9|77/78|Helicase_C| HM:PFM:REP 258->330|PF00883|0.00074|21.4|70/311|Peptidase_M17| GO:PFM:NREP 6 GO:PFM GO:0003676|"GO:nucleic acid binding"|PF00270|IPR011545| GO:PFM GO:0005524|"GO:ATP binding"|PF00270|IPR011545| GO:PFM GO:0008026|"GO:ATP-dependent helicase activity"|PF00270|IPR011545| GO:PFM GO:0003676|"GO:nucleic acid binding"|PF00271|IPR001650| GO:PFM GO:0004386|"GO:helicase activity"|PF00271|IPR001650| GO:PFM GO:0005524|"GO:ATP binding"|PF00271|IPR001650| RP:SCP:NREP 1 RP:SCP:REP 85->430|1pjrA1|4e-52|11.1|314/315|c.37.1.19| HM:SCP:REP 85->172|1qhh.1|0.00048|29.1|79/0|c.37.1.19|1/1|P-loop containing nucleoside triphosphate hydrolases| HM:SCP:REP 148->441|1wp9A2|1.9e-78|43.6|273/0|c.37.1.19|1/1|P-loop containing nucleoside triphosphate hydrolases| OP:NHOMO 10796 OP:NHOMOORG 1078 OP:PATTERN ---2-12333333343-21221-2------1-1111111111134233-4224-1-111112321-12 1121433344332332322-23113322222234443556-32543432544545423--4433333564211111111132-11111776726333--7387748AA18--------------23213433242312211111212212212----2212211112343211111111111141221--1125666666675777666535544776222325455555655344444434444444344445344334444455333343344222233333333333333333323333333333333333333333333-534755555556563522544434-1-122116454-1111------115-5334423213333334223433333333333333-3343343324223443333333333334344254454425555555536664323------------111111111111111111333324444355555554444445544443455544452344454544585654554343353222222242244574925253224333-554535555444465424--1-------1111111116111522BB8856D79BBBFEEEEEEEEEECDEDECD1-2222311111165666666667667666-66667666666566666666666655666666666666565566665666651655667755667114521222333426558434344244344444222222222257786777777666677683222222226BBBB999999CDBB44555555553333232-333333--------21322232---1--12---11121-11122111------34 SSNNVUP5*ROKRPUOPQPQPPPQQPQPPPPPPNNNOQOOMOOPNORQOOQPRROOPROQQQOOOOOOHPROOOOPQLQROPNOONMN-MaRPPPSSOQOPORccdAU*U*iuiphyYVWQVdVvqT*U**l3vi*TXZUmVZgUQabTTfTOwVgXTYb*vgZWUWlYe*gmiTMbai*idcSbvm**S*rXXdYZZd --------------------------------------------------------------------------------------------------------------------------------------------------------------------------1---- STR:NPRED 464 STR:RPRED 83.5 SQ:SECSTR ###################################################################cHHTTccGGGcHHHHHHHHHHHHHHHTcccccHHHHHHHHHTTTTEEEEccTTccHHHHTHHHHHHHTcTTTcTTccccTccccEEEEEccHHHHHHHHHTTHHHHHHTTccEEEccTTccHHHHHHHHHccEEEEEHHHHHHHHHHHHTcccEEEEETHHHHHTTcccccEEccEEccTTTGGGcccEEEEEEccccTTccHHHHHcccEEEEcccccccccEEcccEEEccHHHHHHHHHHHHHHGGTcHHHHTccEEEEcccHHHHHHHHHHHHHTcccccEEccccHHHHHHHHTTTTccccEEEEcTTccTTccccTTccTEEEEccccccTTHHHHHHHTccGGGcccEEEEEEEHHHHHccHHHHHHHTTcccEEHHHHTGccHHHHHHHHHHHHHTTccEEEccTTccHHHHHHHHHHHHHHHTcGGGTcccccEEEccHHHHHHHHHcccHHHHH######################### DISOP:02AL 1-6,64-66,453-549,553-557| PSIPRED ccccccccEEEEccccccEEEEEEcccccccHHHccccccccccccHHHHcccccccEEEEEccccccccccccHHHccccHHHHHHHHHcccccccHHHHHHHHHHHccccEEccccccccccHHHHHHHHHHHHccccccccccccccEEEEEcccHHHHHHHHHHHHHHHHHcccEEEEEEccccHHHHHHHHHccccEEEEccHHHHHHHHcccccccccEEEEEEccHHHcccccHHHHHHHHHHcccHHcEEEEEccccHHHHHHHHHHccccEEEEEccccccccccEEEEEEEcHHHHHHHHHHHHHHHHHcccccEEEEEEccHHHHHHHHHHHHHccccEEEEcccccHHHHHHHHHHHHcccccEEEEccHHHcccccccccEEEEccccccHHHHccccccccccccccEEEEEEEcHHHHHHHHHHHHHHcccccHHHccccccccccccccHHHHHHHHHHHHHHccccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc //