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Ralstonia metallidurans CH34 (rmet0)
Gene : ABF09463.1
DDBJ      :             transcriptional regulator, IclR family
Swiss-Prot:             

Homologs  Archaea  1/68 : Bacteria  297/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
a.4.5d.110.2
:325 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   79->322 2ia2C PDBj 4e-26 37.3 %
:RPS:PDB   150->319 3d3oB PDBj 3e-26 14.4 %
:RPS:SCOP  79->152 1mkmA1  a.4.5.33 * 3e-06 10.8 %
:RPS:SCOP  151->318 1td5A  d.110.2.2 * 5e-30 21.0 %
:HMM:SCOP  79->152 1mkmA1 a.4.5.33 * 5.9e-12 28.4 %
:HMM:SCOP  148->325 1td5A_ d.110.2.2 * 4.4e-43 37.9 %
:RPS:PFM   197->320 PF01614 * IclR 1e-06 29.3 %
:HMM:PFM   195->319 PF01614 * IclR 2.9e-29 36.0 125/129  
:HMM:PFM   81->132 PF09339 * HTH_IclR 4.7e-13 34.6 52/52  
:BLT:SWISS 77->311 PCAR_PSEPU 3e-29 27.7 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABF09463.1 GT:GENE ABF09463.1 GT:PRODUCT transcriptional regulator, IclR family GT:DATABASE GIB00349CH01 GT:ORG rmet0 GB:ACCESSION GIB00349CH01 GB:LOCATION 2812199..2813176 GB:FROM 2812199 GB:TO 2813176 GB:DIRECTION + GB:PRODUCT transcriptional regulator, IclR family GB:PROTEIN_ID ABF09463.1 GB:DB_XREF GI:93355374 InterPro:IPR005471 LENGTH 325 SQ:AASEQ MITFIAVSWFFWFFLAFPDCPAIVVFAEPRFANICSENAYHTDRQPGRKPGLTLGYLSLISTPMPDDHAPEIPKKEELLDSLTKGLALLRLYASGVERLTMQEVADELDVTRAAARRLLLTLAHNGYLAQEGRQFALTPKVMDLGYAYFASMNLPQLARPYLQALCAEVGESCSVGMLDQESVVLVAREEPSQLLRVDMAIGRRMPAYAHSLGRVLLAGLDAEALDAYLAQAELRQLTPFTISSRPALARKLEAVRADGFCTLISELADGFAGISVPLHDQTGKTAAGLGLSMVLGSRDQAYLEKHYLPPLRRTAAQIESILKAR GT:EXON 1|1-325:0| BL:SWS:NREP 1 BL:SWS:REP 77->311|PCAR_PSEPU|3e-29|27.7|235/291| TM:NTM 1 TM:REGION 5->27| SEG 111->123|traaarrllltla| SEG 216->234|llagldaealdaylaqael| BL:PDB:NREP 1 BL:PDB:REP 79->322|2ia2C|4e-26|37.3|241/244| RP:PDB:NREP 1 RP:PDB:REP 150->319|3d3oB|3e-26|14.4|160/163| RP:PFM:NREP 1 RP:PFM:REP 197->320|PF01614|1e-06|29.3|123/127|IclR| HM:PFM:NREP 2 HM:PFM:REP 195->319|PF01614|2.9e-29|36.0|125/129|IclR| HM:PFM:REP 81->132|PF09339|4.7e-13|34.6|52/52|HTH_IclR| RP:SCP:NREP 2 RP:SCP:REP 79->152|1mkmA1|3e-06|10.8|74/75|a.4.5.33| RP:SCP:REP 151->318|1td5A|5e-30|21.0|167/179|d.110.2.2| HM:SCP:REP 79->152|1mkmA1|5.9e-12|28.4|74/0|a.4.5.33|1/1|"Winged helix" DNA-binding domain| HM:SCP:REP 148->325|1td5A_|4.4e-43|37.9|177/0|d.110.2.2|1/1|GAF domain-like| OP:NHOMO 644 OP:NHOMOORG 298 OP:PATTERN ------------------------1------------------------------------------- --311--1222----1----------------1---1265------1-----412---------12C2311-----------1----1------------------------------------------------12111----2-------------------------------------1-112---111-----11--1--1-1221111-1-12312--------2-------------------------------------------------------------------------------------------12--1--------------1-------------11--1--214---2-----------------212--322-11111111111-2------1--63--31111122224241---214---111---------2---------------------------------------2--1A7352336433111-44781111-242879C7--33231111636-53--11---------------1---1-----1-------111122211-----------1-------------------------1---1------------------------------------211322-4223433333-233333332323233333555523-1-3133323333333332433233311-111111111111----------------111111----1-11--12222212---2-21111312122321111-------------1------1-12--11111111--------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 250 STR:RPRED 76.9 SQ:SECSTR ###########################################################################HHHHHHHTcHHHHHHHHHHTTccccHHHHHHHHTccHHHHHHHHHHHHHTTcEEEEEEETTEEEEEEEEccccTccHHHHHHHHHHHHHHHHHHccEEEEEEEETTEEEEEEEEcccccccccccccccEEGGcHHHHHTHHHcHHTcHHHHHHHHHHHHHHHGGGTcccccHHHHHHHHHHHcEEEEEccccTTEEEEEEEccccTTccEEEEEEEHHHHHHTHHHHHHHHHHHHHHHHHHHTTccccc DISOP:02AL 41-81,325-326| PSIPRED cEEEEEHHHHHHHHHHcccccEEEEEEcccHHHcccccccHHcccccccccccccHHcccccccccccccccccccccHHHHHHHHHHHHHHHcccccccHHHHHHHHccHHHHHHHHHHHHHHcccEEEccccEEEcHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccEEEEEEEccEEEEEEEEEccccEEEEEccccEEcHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHccEEEccccccccEEEEEEEEcccccEEEEEEEEEEHHHccHHHHHHHHHHHHHHHHHHHHHHHccc //