[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Ralstonia metallidurans CH34 (rmet0)
Gene : ABF09671.1
DDBJ      :             transcriptional regulator, GntR family
Swiss-Prot:             

Homologs  Archaea  10/68 : Bacteria  461/915 : Eukaryota  3/199 : Viruses  0/175   --->[See Alignment]
a.4.5a.78.1
:233 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   22->202 3fmsA PDBj 2e-11 30.4 %
:RPS:PDB   2->219 3c7jA PDBj 1e-28 21.8 %
:RPS:SCOP  6->75 1e2xA1  a.4.5.6 * 8e-14 25.7 %
:RPS:SCOP  48->212 1e2xA2  a.78.1.1 * 3e-20 12.5 %
:HMM:SCOP  5->77 1hw1A1 a.4.5.6 * 2.3e-16 46.6 %
:RPS:PFM   11->70 PF00392 * GntR 3e-05 48.3 %
:RPS:PFM   80->202 PF07729 * FCD 3e-13 36.6 %
:HMM:PFM   80->203 PF07729 * FCD 2.7e-33 39.5 124/125  
:HMM:PFM   8->70 PF00392 * GntR 1e-19 49.2 63/64  
:BLT:SWISS 9->183 YDHC_BACSU 1e-16 28.7 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABF09671.1 GT:GENE ABF09671.1 GT:PRODUCT transcriptional regulator, GntR family GT:DATABASE GIB00349CH01 GT:ORG rmet0 GB:ACCESSION GIB00349CH01 GB:LOCATION complement(3045520..3046221) GB:FROM 3045520 GB:TO 3046221 GB:DIRECTION - GB:PRODUCT transcriptional regulator, GntR family GB:PROTEIN_ID ABF09671.1 GB:DB_XREF GI:93355582 InterPro:IPR000524 InterPro:IPR011711 LENGTH 233 SQ:AASEQ MRIVQQALYLEVADRLRAMIDDHTLLPGAWIDEVALAAALGTSRTPMREALKVLAAEGLVRLEPRRGCFVNALTEQDLDEIFPLMALLEGRCAYEAARNVTQTDLDALEGLHAELARHAAAGDIDAYYETNYQIHEAIQRLAGNRWLSGVVSDLRKVLRLSRHKSLKLPGRIQESCAEHMSVFSALKAHDPEGAEALMKTHVLRQRGALSALDRADPEPPAVAPGQLRLAGQD GT:EXON 1|1-233:0| BL:SWS:NREP 1 BL:SWS:REP 9->183|YDHC_BACSU|1e-16|28.7|174/224| BL:PDB:NREP 1 BL:PDB:REP 22->202|3fmsA|2e-11|30.4|171/206| RP:PDB:NREP 1 RP:PDB:REP 2->219|3c7jA|1e-28|21.8|211/232| RP:PFM:NREP 2 RP:PFM:REP 11->70|PF00392|3e-05|48.3|60/64|GntR| RP:PFM:REP 80->202|PF07729|3e-13|36.6|123/125|FCD| HM:PFM:NREP 2 HM:PFM:REP 80->203|PF07729|2.7e-33|39.5|124/125|FCD| HM:PFM:REP 8->70|PF00392|1e-19|49.2|63/64|GntR| GO:PFM:NREP 3 GO:PFM GO:0003700|"GO:transcription factor activity"|PF00392|IPR000524| GO:PFM GO:0005622|"GO:intracellular"|PF00392|IPR000524| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF00392|IPR000524| RP:SCP:NREP 2 RP:SCP:REP 6->75|1e2xA1|8e-14|25.7|70/73|a.4.5.6| RP:SCP:REP 48->212|1e2xA2|3e-20|12.5|144/149|a.78.1.1| HM:SCP:REP 5->77|1hw1A1|2.3e-16|46.6|73/0|a.4.5.6|1/1|"Winged helix" DNA-binding domain| OP:NHOMO 1792 OP:NHOMOORG 474 OP:PATTERN ------2-11-11111-1--------------------------------------------1----- 1-1132133341--33211-12--2F1-1112322246GH-1-4831--2119BA131----5-54D7742---------1-8----------------------1---1--------------------------12243----4-----------------------1-------------2-211-1-5122222211212221-2815522221-11141-------35-------------------------1-----------1------------222-11-----------------1----------------25215-----11---3311----212---2322552321--241112-1-1--3332-----32I98--641231AA79A99788D-57C55F6CCE1-QBBD9ACGBHDEG91-258D658A738111111115221-2-5-------------------------------15--7MJ8A98967772221AAJH33222294ODHIE2255575534F6I3IC363----1-----------412--712112--2112-2121211-1-------3--1------------------1-----111113222122222222322222232232----1--------2252-231111111111-111121112111111111322223--13-3232333322332231111111---11111111111--------------3376---1-----------34454231--2235445856469681545-------------211111121121122122----------------------------------------------------------11111--- --------------------------------------------------------------------------------------------------------------------------------------------------------------2----1------------------------1---------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 220 STR:RPRED 94.4 SQ:SECSTR HcccGGGHHHHHHHHHHHHHHTccccTTccccHHHHHHHHTccHHHHHHHHHHHHHTTcEEEETTTEEEEcccHHHHHHHHHHHHHHHHHHHHHHHGGGccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHTTTcccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHTTcHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT############# DISOP:02AL 1-6,210-227,229-234| PSIPRED cccccccHHHHHHHHHHHHHHcccccccccccHHHHHHHHccccHHHHHHHHHHHHcccEEEEcccEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHccHHcccccccccccccc //