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Ralstonia metallidurans CH34 (rmet0)
Gene : ABF09820.1
DDBJ      :             protein translocase subunit secF
Swiss-Prot:             

Homologs  Archaea  1/68 : Bacteria  775/915 : Eukaryota  3/199 : Viruses  0/175   --->[See Alignment]
f.35.1
:324 amino acids
:PSIPRED
:DISOPRED
:RPS:SCOP  122->296 1iwgA7  f.35.1.1 * 9e-24 12.6 %
:HMM:SCOP  69->301 1iwgA8 f.35.1.1 * 1.5e-38 27.5 %
:RPS:PFM   120->295 PF02355 * SecD_SecF 6e-39 45.5 %
:HMM:PFM   115->296 PF02355 * SecD_SecF 2.9e-65 42.9 182/189  
:HMM:PFM   37->60 PF07549 * Sec_GG 2.6e-07 37.5 24/29  
:BLT:SWISS 22->311 SECF_ECOLI 4e-60 38.3 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABF09820.1 GT:GENE ABF09820.1 GT:PRODUCT protein translocase subunit secF GT:DATABASE GIB00349CH01 GT:ORG rmet0 GB:ACCESSION GIB00349CH01 GB:LOCATION 3203941..3204915 GB:FROM 3203941 GB:TO 3204915 GB:DIRECTION + GB:PRODUCT protein translocase subunit secF GB:PROTEIN_ID ABF09820.1 GB:DB_XREF GI:93355731 InterPro:IPR003335 InterPro:IPR005665 LENGTH 324 SQ:AASEQ MEFFRIKRDIPFMKHALIFNVVSFLTFAAAVFFLWHKGLHLSIEFTGGTVMEVNYQQAVDLEKVRGQVSKLGYSDVQVQNFGTSRDVMIRLPLQKGPDGKQVTSAQQSEQVMGALTAASPDVKLQRVEFVGPQVGKELATDGLLALLCVVAGIVIYLSFRFEWKFAVAGIIANLHDVVIILGFFAFFQWEFSLSVLAAILAVLGYSVNESVVIFDRIREAFRKYRKMTTHEVIDHAITSTMSRTIITHGSTEMMVLSMFFFGGPTLHYFALALTVGILFGIYSSVFVAAALAMWLGVKREDLVKGDKKGGDVTDRNDPNFGAQA GT:EXON 1|1-324:0| BL:SWS:NREP 1 BL:SWS:REP 22->311|SECF_ECOLI|4e-60|38.3|287/323| TM:NTM 6 TM:REGION 12->34| TM:REGION 139->161| TM:REGION 164->186| TM:REGION 191->213| TM:REGION 254->276| TM:REGION 279->298| SEG 192->203|slsvlaailavl| RP:PFM:NREP 1 RP:PFM:REP 120->295|PF02355|6e-39|45.5|176/185|SecD_SecF| HM:PFM:NREP 2 HM:PFM:REP 115->296|PF02355|2.9e-65|42.9|182/189|SecD_SecF| HM:PFM:REP 37->60|PF07549|2.6e-07|37.5|24/29|Sec_GG| GO:PFM:NREP 3 GO:PFM GO:0008565|"GO:protein transporter activity"|PF02355|IPR003335| GO:PFM GO:0015627|"GO:type II protein secretion system complex"|PF02355|IPR003335| GO:PFM GO:0015628|"GO:protein secretion by the type II secretion system"|PF02355|IPR003335| RP:SCP:NREP 1 RP:SCP:REP 122->296|1iwgA7|9e-24|12.6|174/199|f.35.1.1| HM:SCP:REP 69->301|1iwgA8|1.5e-38|27.5|218/223|f.35.1.1|1/1|Multidrug efflux transporter AcrB transmembrane domain| OP:NHOMO 857 OP:NHOMOORG 779 OP:PATTERN -----------------------------------------------------------1-------- 111111-1-----11--11-11--11-----11111-111111111111111-1111111--111--1221--------111111111111111111--111111111111111111111111111-1111111111111111111111111111111111111111111111111111-11111111112111111111111111111111111111111111-1111111111111111111111111111----------------------------------------------------------------------11-1111111111111-111222111--1111111111111111111111111111111111111111111111122222222222-11111111111121122222222211121112111112111111111-1-111222211111111111111111111111111111121111111111111111111111111111111111111111111111111111111111111111111111111111111111111111211111211111111111111111111111111111111111112212111122222222122222212222221-11111------11111111111111111-1111111111111111111111111111111111111111111111111111-111111111111111111111111111111111111111111111111211111111111111111111111111111111111122212222223221111111111111112211111111111111111----------11--111----11---1111111111111 --------------------------------------------------------------------------------------------------------------------------------------------------------------1--------------------------1--2---------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- DISOP:02AL 1-1,92-107,300-314,321-325| PSIPRED ccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccEEEcccEEEEEEEcccccHHHHHHHHHHccccccEEEEEccccEEEEEEcccccccHHHHHHHHHHHHHHHHHHccccccEEEEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHcccHHHccccccccccccccccc //