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Ralstonia metallidurans CH34 (rmet0)
Gene : ABF09864.1
DDBJ      :             Integrase, catalytic region
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  478/915 : Eukaryota  3/199 : Viruses  3/175   --->[See Alignment]
c.55.3
:512 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:RPS:PDB   350->488 1cz9A PDBj 1e-17 14.8 %
:RPS:SCOP  348->505 1b92A  c.55.3.2 * 1e-14 13.1 %
:HMM:SCOP  340->513 1c0mA2 c.55.3.2 * 2e-32 34.8 %
:RPS:PFM   180->338 PF05622 * HOOK 8e-04 35.1 %
:HMM:PFM   345->461 PF00665 * rve 3.8e-19 26.7 116/120  
:HMM:PFM   2->52 PF01527 * Transposase_8 0.00019 27.1 48/76  
:HMM:PFM   57->102 PF01527 * Transposase_8 0.00061 20.0 45/76  
:HMM:PFM   126->180 PF01527 * Transposase_8 1.2e-05 22.7 44/76  
:BLT:SWISS 1->510 T1353_SHIFL e-144 50.0 %
:REPEAT 2|2->59|60->112

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABF09864.1 GT:GENE ABF09864.1 GT:PRODUCT Integrase, catalytic region GT:DATABASE GIB00349CH01 GT:ORG rmet0 GB:ACCESSION GIB00349CH01 GB:LOCATION complement(3247826..3249364) GB:FROM 3247826 GB:TO 3249364 GB:DIRECTION - GB:PRODUCT Integrase, catalytic region GB:PROTEIN_ID ABF09864.1 GB:DB_XREF GI:93355775 InterPro:IPR001584 LENGTH 512 SQ:AASEQ MYSYADRIRAVALYIKLGLRVRATIRQLGYPTKNALKGWYQHYLKHQDLPASQAPRAPKYSLQQRQVAIAHYLAHDRCIAATMRALGYPGRGTLTAWVRQDCPDTCKSRVGRSWPATKPDALMCEGVVQLCARRSSAQQIADKLGVCRGTLYNWKNQLLGPCAPASMKHSPKRSPVLDEAALRRQVESLRQDVRRLKIERELLKQAHEILKNGADIDLHRLANKDKAVLVEALHGQYELPELLSLVGLARSSYFYHRARLKLADKYVDLRRSITEIFDNNYRCYGYRRVQASLLKECTGISEKVVRRLMKQEGLIVAKPKRRRYNSYLGEIGAAPQNLINRDFRAAAPNEKWLTDITELQIPAGKVYLSPVIDCFDGLVVSWSIGTHPNAHLVNTMLDAAIDAVQGSESRPVIHSDRGAHYRWPGWLSRVHDAKLTRSMSRKGCSPDNAACEGFFGRLKMELFYPNNWQSTTIEQFIEAVDAYIRWYNEKRIKVSLGRLSPVEYRHKLGLAA GT:EXON 1|1-512:0| BL:SWS:NREP 1 BL:SWS:REP 1->510|T1353_SHIFL|e-144|50.0|508/514| NREPEAT 1 REPEAT 2|2->59|60->112| RP:PDB:NREP 1 RP:PDB:REP 350->488|1cz9A|1e-17|14.8|135/139| RP:PFM:NREP 1 RP:PFM:REP 180->338|PF05622|8e-04|35.1|134/582|HOOK| HM:PFM:NREP 4 HM:PFM:REP 345->461|PF00665|3.8e-19|26.7|116/120|rve| HM:PFM:REP 2->52|PF01527|0.00019|27.1|48/76|Transposase_8| HM:PFM:REP 57->102|PF01527|0.00061|20.0|45/76|Transposase_8| HM:PFM:REP 126->180|PF01527|1.2e-05|22.7|44/76|Transposase_8| GO:PFM:NREP 3 GO:PFM GO:0000226|"GO:microtubule cytoskeleton organization"|PF05622|IPR008636| GO:PFM GO:0005737|"GO:cytoplasm"|PF05622|IPR008636| GO:PFM GO:0008017|"GO:microtubule binding"|PF05622|IPR008636| RP:SCP:NREP 1 RP:SCP:REP 348->505|1b92A|1e-14|13.1|137/144|c.55.3.2| HM:SCP:REP 340->513|1c0mA2|2e-32|34.8|164/0|c.55.3.2|1/1|Ribonuclease H-like| OP:NHOMO 3667 OP:NHOMOORG 484 OP:PATTERN -------------------------------------------------------------------- 1-HI-NBH222M-D1G122-2L--58H5IIF-ECFC-4B6--253--4---1-1--4*---25---81-2-5---97-1-47-----1--8-----1----3-5-4-3--------------------62-114-3------4---91----------------1-4----------------5--1-----74----362869C786B-5992-941-33714-2--2-26122216----1212-2-2--3-7--D8-O-6-21537-851942OlN561DBi9-7515-5565344332312533465262--GIB------7-41121111-8-R-11---139I-2--25-A421543--112---9-12BE----------A3312---1------------2-5-1----D111--443---2--12-4-1-4-2-1-B24-CCCCCCCC154B1A---------------------1-------------1-----X422DA55-11-GF451-1----AE-11G-283A87D361291-57131-11--24-111-DK38-4-13112-8---------15--33----124-----------------------D-2--2-J337-83--31eAJ489-11-31nBA736----25--------1132226NPD62C77D-O965C581*6Q5ABB5CB3615--71-13------322-2--26*e*****--B9983A888-4----------5--1421-9ABD-15-112-1-----51--5A9I6823911--1-341-589E---------42---65645d1125D3L9H7966A------8-----A4----------16981----223------D--3-11----8--------- -----------------------------------------------------------------------------------------------------------------------------------------------3--------------------------1-----------------3---------- ------------------------------------------------------------1-----------------------------------------------------------------------------------------1-----1------------------ STR:NPRED 226 STR:RPRED 44.1 SQ:SECSTR #################################################################################################################################################################################HHHHHHHHHHHHHHHHHGHH#HHHHHHHHHHHHHTTccGGGccccccTTHHH########################################################################################################ccccTTTccccTTcTTcEEEEEEEEcGGGTTccEEEEEEETTTccEEEEEEccccHHHHHHHHHHHHHHHHHHHccccEEEEEccHHHHcHHHHHHHHHHTcEEEEEcTTcHHHHHHHHHHHHHHHHHHHHHHHHTTccHHHHHHHHHHHHHHHcHHccGGGcccccHHHHHHHH#### DISOP:02AL 1-1,49-64,105-117,159-183,263-265,511-513| PSIPRED cccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHccHHHHHHHHHHccccHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHcccccHHHHHHHHcccHHHHHHHHHHHcccccccHHHccccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccHHHccHHHHHHHHHHHHHcccHHHHHHHccccHHHHHHHHcccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHcccEEEEcHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHccccEEcccccEEEEEEEEcccccccEEEEEEEEccccEEEEEEEcccccHHHHHHHHHHHHHHHccccccEEEEEEccccccHHHHHHHHHHcccccEEccccccccccccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHccccccHHcccccHHHHHHHHHccc //