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Rhodopseudomonas palustris BisB5 (rpal2)
Gene : ABE37242.1
DDBJ      :             DNA polymerase III, beta subunit
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  892/915 : Eukaryota  2/199 : Viruses  0/175   --->[See Alignment]
d.131.1
:372 amino acids
:SECSTR
:PSIPRED
:BLT:PDB   1->372 1mmiA PDBj 8e-76 42.1 %
:RPS:PDB   1->371 2awaB PDBj 6e-91 23.8 %
:RPS:SCOP  1->120 1jqjA1  d.131.1.1 * 9e-33 46.6 %
:RPS:SCOP  123->250 1vpkA2  d.131.1.1 * 4e-34 23.8 %
:RPS:SCOP  252->372 1vpkA3  d.131.1.1 * 2e-32 32.2 %
:HMM:SCOP  1->120 1vpkA2 d.131.1.1 * 1.1e-26 39.0 %
:HMM:SCOP  127->250 1vpkA2 d.131.1.1 * 2.8e-26 36.4 %
:HMM:SCOP  251->373 1vpkA3 d.131.1.1 * 9.7e-36 48.8 %
:RPS:PFM   1->120 PF00712 * DNA_pol3_beta 5e-24 54.7 %
:RPS:PFM   130->249 PF02767 * DNA_pol3_beta_2 1e-20 44.0 %
:RPS:PFM   252->371 PF02768 * DNA_pol3_beta_3 6e-26 44.2 %
:HMM:PFM   131->249 PF02767 * DNA_pol3_beta_2 4.3e-37 49.6 115/116  
:HMM:PFM   1->120 PF00712 * DNA_pol3_beta 4.4e-38 41.5 118/120  
:HMM:PFM   252->371 PF02768 * DNA_pol3_beta_3 8.8e-34 39.2 120/121  
:BLT:SWISS 1->372 DPO3B_CAUCR e-111 53.2 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABE37242.1 GT:GENE ABE37242.1 GT:PRODUCT DNA polymerase III, beta subunit GT:DATABASE GIB00345CH01 GT:ORG rpal2 GB:ACCESSION GIB00345CH01 GB:LOCATION 2329..3447 GB:FROM 2329 GB:TO 3447 GB:DIRECTION + GB:PRODUCT DNA polymerase III, beta subunit GB:PROTEIN_ID ABE37242.1 GB:DB_XREF GI:91680940 InterPro:IPR001001 LENGTH 372 SQ:AASEQ MKVTVERAQLLKSLGHVHRVVERRNTIPILGNVLVRAENAQLALKATDLDLEVIETLPAETATAGSTTVPAHMFYDIVRKLPDGSQIVLESDGDRSVLAIRAGRSRFTLQTLPESDFPDLAAGEMSHSFSLAASDVKRLIDRTQFAISTEETRYYLNGIYLHTAGSAKAATLRAVATDGHRLAQVDLAQPAGASGMPGVIVPRKTVGEVQRLIEDNDAEIAIELSAGKIRFTIGNVVLTSKLIDGTFPDYGRVIPQNNDKELVVDKKEFEAAVDRVSTISSERGRAVKLALSAGKLVLSVTNPDSGSATEELEVEYASDALDIGFNSRYLLDIAAQIEGEVAVLKLADPGSPTLIQDRDTKNALYVLMPMRV GT:EXON 1|1-372:0| BL:SWS:NREP 1 BL:SWS:REP 1->372|DPO3B_CAUCR|e-111|53.2|372/372| BL:PDB:NREP 1 BL:PDB:REP 1->372|1mmiA|8e-76|42.1|363/366| RP:PDB:NREP 1 RP:PDB:REP 1->371|2awaB|6e-91|23.8|365/375| RP:PFM:NREP 3 RP:PFM:REP 1->120|PF00712|5e-24|54.7|117/119|DNA_pol3_beta| RP:PFM:REP 130->249|PF02767|1e-20|44.0|116/116|DNA_pol3_beta_2| RP:PFM:REP 252->371|PF02768|6e-26|44.2|120/121|DNA_pol3_beta_3| HM:PFM:NREP 3 HM:PFM:REP 131->249|PF02767|4.3e-37|49.6|115/116|DNA_pol3_beta_2| HM:PFM:REP 1->120|PF00712|4.4e-38|41.5|118/120|DNA_pol3_beta| HM:PFM:REP 252->371|PF02768|8.8e-34|39.2|120/121|DNA_pol3_beta_3| GO:PFM:NREP 15 GO:PFM GO:0003677|"GO:DNA binding"|PF00712|IPR001001| GO:PFM GO:0003887|"GO:DNA-directed DNA polymerase activity"|PF00712|IPR001001| GO:PFM GO:0006260|"GO:DNA replication"|PF00712|IPR001001| GO:PFM GO:0008408|"GO:3'-5' exonuclease activity"|PF00712|IPR001001| GO:PFM GO:0009360|"GO:DNA polymerase III complex"|PF00712|IPR001001| GO:PFM GO:0003677|"GO:DNA binding"|PF02767|IPR001001| GO:PFM GO:0003887|"GO:DNA-directed DNA polymerase activity"|PF02767|IPR001001| GO:PFM GO:0006260|"GO:DNA replication"|PF02767|IPR001001| GO:PFM GO:0008408|"GO:3'-5' exonuclease activity"|PF02767|IPR001001| GO:PFM GO:0009360|"GO:DNA polymerase III complex"|PF02767|IPR001001| GO:PFM GO:0003677|"GO:DNA binding"|PF02768|IPR001001| GO:PFM GO:0003887|"GO:DNA-directed DNA polymerase activity"|PF02768|IPR001001| GO:PFM GO:0006260|"GO:DNA replication"|PF02768|IPR001001| GO:PFM GO:0008408|"GO:3'-5' exonuclease activity"|PF02768|IPR001001| GO:PFM GO:0009360|"GO:DNA polymerase III complex"|PF02768|IPR001001| RP:SCP:NREP 3 RP:SCP:REP 1->120|1jqjA1|9e-33|46.6|118/122|d.131.1.1| RP:SCP:REP 123->250|1vpkA2|4e-34|23.8|122/123|d.131.1.1| RP:SCP:REP 252->372|1vpkA3|2e-32|32.2|121/123|d.131.1.1| HM:SCP:REP 1->120|1vpkA2|1.1e-26|39.0|118/0|d.131.1.1|1/3|DNA clamp| HM:SCP:REP 127->250|1vpkA2|2.8e-26|36.4|118/0|d.131.1.1|2/3|DNA clamp| HM:SCP:REP 251->373|1vpkA3|9.7e-36|48.8|123/0|d.131.1.1|2/2|DNA clamp| OP:NHOMO 948 OP:NHOMOORG 894 OP:PATTERN -------------------------------------------------------------------- 1111111111111-11112-11111111111111112111112121111111111111111111112221211111111111111111111111111-11111111121111111111111111111111111111111111111112211111111111111111122111111111111111211111141122222232123323311111122211121111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111112212111111111111111111111111111111111121111111111111111111111111111111111111-11111111111111121111111111111113111111111111111111111111111211111111111111111111111111211111111111111111111111111111111111111111111111112111111111111211111111111121111111111111111111111111111111111111111111111111111111111111111111111111111111111111111-1111111-11111111111111111111-11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111121111111111111111111111111111111111111111111111111111111111111111111-1-1-1--1111-----111------1111111111111 --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1-----1---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 372 STR:RPRED 100.0 SQ:SECSTR cEEEEEHHHHHHHHHHHHTTcccccccGGGGEEEEEEcccEEEEEEEcccEEEEEEEETTcGGGTEEEEEHHHHHHHHHHccccEEEEEEETTTEEEEEEEETTEEEEEEcccGGGccccccccccccEEEEHHHHHHHHHHHGGGccccTTcGGGGEEEEEEETTTEEEEEEEEEEcccEEEEEEEEcccccccEEEEEEEHHHHHHHHHHccTTccEEEEEEcccEEEEEcccEEEEEEcccccccccGGGccccccEEEEEEHHHHHHHHHHHHHHTTcccccEEEEEETTEEEEEEEETTTEEEEEEEccEEEEccEEEEEcHHHHHHHHHTccccEEEEEEccccccEEEEEcccccEEEEEccccc PSIPRED cEEEEEHHHHHHHHHHHHHHccccccccHHcEEEEEEEccEEEEEEEccEEEEEEEEEEEEccccEEEEEHHHHHHHHHHcccccEEEEEEEccccEEEEEEccEEEEEccccHHHccccccccccEEEEEEHHHHHHHHHHHHHHHccccccEEEEEEEEEEcccccccEEEEEEEcccEEEEEEEEccccccccccEEEEHHHHHHHHHHHcccccEEEEEEEccEEEEEEccEEEEEEcccccccccHHcccccccEEEEEEHHHHHHHHHHHHHHHcccccEEEEEEEccEEEEEEEcccccEEEEEEEEEEccccEEEEEcHHHHHHHHHHccccEEEEEEEcccccEEEEEcccccEEEEEEEEEc //