[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Rhodopseudomonas palustris BisB5 (rpal2)
Gene : ABE37286.1
DDBJ      :             transcriptional regulator, GntR family
Swiss-Prot:             

Homologs  Archaea  4/68 : Bacteria  382/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
a.4.5a.78.1
:247 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   51->138 3ihuB PDBj 8e-10 34.9 %
:RPS:PDB   35->242 3c7jA PDBj 9e-22 17.9 %
:RPS:SCOP  33->99 1e2xA1  a.4.5.6 * 5e-13 34.3 %
:RPS:SCOP  73->227 1e2xA2  a.78.1.1 * 4e-12 21.2 %
:HMM:SCOP  31->103 1hw1A1 a.4.5.6 * 5.2e-16 38.4 %
:RPS:PFM   36->96 PF00392 * GntR 6e-08 49.2 %
:RPS:PFM   107->227 PF07729 * FCD 2e-06 29.4 %
:HMM:PFM   36->96 PF00392 * GntR 2.9e-20 44.3 61/64  
:HMM:PFM   107->229 PF07729 * FCD 1.9e-20 28.9 121/125  
:BLT:SWISS 39->240 YDFH_SHIFL 9e-15 27.5 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABE37286.1 GT:GENE ABE37286.1 GT:PRODUCT transcriptional regulator, GntR family GT:DATABASE GIB00345CH01 GT:ORG rpal2 GB:ACCESSION GIB00345CH01 GB:LOCATION complement(57862..58605) GB:FROM 57862 GB:TO 58605 GB:DIRECTION - GB:PRODUCT transcriptional regulator, GntR family GB:PROTEIN_ID ABE37286.1 GB:DB_XREF GI:91680984 InterPro:IPR000524 InterPro:IPR011711 LENGTH 247 SQ:AASEQ MRESMNQSSDPDQDIAQQPPAEAVEAAGEDLISSADRAYKIIEARIVQLKYPPGHALSEHQLSRELGISRTPVREAFRRLAVEQLVEILPRKGAFVTEIKINQYLHLLDLRQQLETFMAVRAAKRATPQQRQAMATLAQELRDGIMEPEQAIFVFADRAYKDILVEASRNPFVGGIIAPMHALSRRFWYYYRDQWTEGEAEVAIKRHLALMDAVAIGDEAATHTAVQNLFSYLEGFARRIMDSEYKI GT:EXON 1|1-247:0| BL:SWS:NREP 1 BL:SWS:REP 39->240|YDFH_SHIFL|9e-15|27.5|200/228| SEG 16->27|aqqppaeaveaa| BL:PDB:NREP 1 BL:PDB:REP 51->138|3ihuB|8e-10|34.9|86/199| RP:PDB:NREP 1 RP:PDB:REP 35->242|3c7jA|9e-22|17.9|196/232| RP:PFM:NREP 2 RP:PFM:REP 36->96|PF00392|6e-08|49.2|61/64|GntR| RP:PFM:REP 107->227|PF07729|2e-06|29.4|119/125|FCD| HM:PFM:NREP 2 HM:PFM:REP 36->96|PF00392|2.9e-20|44.3|61/64|GntR| HM:PFM:REP 107->229|PF07729|1.9e-20|28.9|121/125|FCD| GO:PFM:NREP 3 GO:PFM GO:0003700|"GO:transcription factor activity"|PF00392|IPR000524| GO:PFM GO:0005622|"GO:intracellular"|PF00392|IPR000524| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF00392|IPR000524| RP:SCP:NREP 2 RP:SCP:REP 33->99|1e2xA1|5e-13|34.3|67/73|a.4.5.6| RP:SCP:REP 73->227|1e2xA2|4e-12|21.2|132/149|a.78.1.1| HM:SCP:REP 31->103|1hw1A1|5.2e-16|38.4|73/0|a.4.5.6|1/1|"Winged helix" DNA-binding domain| OP:NHOMO 1050 OP:NHOMOORG 386 OP:PATTERN ---------1-1--11---------------------------------------------------- ----21--111---2----------9------1---4296---451---22-AAB22-----2-119323------------4-----------------------1-----------------------------11131----3----------------------------------------11-1-3---------11111--15133--11--12131-------26-------------------11-1-11---------11------111----111-11-----------------1----------------25112----------31---1--1121--1212222211--121112-1-1-11222-----22633--43-22-33133333226-33833F4796--G99755695598B2-113395356412--------333--2-3------------------------------113--2C9485442443222144962222-1529989712221452238381A6661----1-----------212--411--------1-2121211-1--------------------------------------112--1-111111--11211-11-11-----1--------134113-3123333333-233343333323333333321211---323232333332322331222221---22222222222--------------2-41---1-----------22112121--1112222224322221132-------------1-1--1-----1111111----------------------------------------------------------1-111--- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 215 STR:RPRED 87.0 SQ:SECSTR #############################cHHHHHHHHHHHHHHHHHTccccTTccccHHHHHHHHTccHHHHHHHHHHHHHTTcEEEETTTEEEEcccHHHHHHHHHHHHHHHHHHHHHHHGGGccHHHHHHHHHHHHHHHHcccHHTcHHHHHHHHHHHHHHTTTcccHHHHHHHHHHHHHHHHHHHHHHHccHHcEcccccHHHHHHHHHHHTTcHHHHHHHHHHHHHHHHHHHHHHHHHc### DISOP:02AL 1-32,244-244| PSIPRED ccccccccccccHHHHHcccHHHHHHcccccccHHHHHHHHHHHHHHcccccccccccHHHHHHHHccccHHHHHHHHHHHHcccEEEEcccEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcc //