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Rhodopseudomonas palustris BisB5 (rpal2)
Gene : ABE37304.1
DDBJ      :             transcriptional regulator, AraC family
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  240/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
a.24.16a.4.1
:318 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   213->314 2k9sA PDBj 9e-12 30.4 %
:RPS:PDB   214->317 1bl0A PDBj 4e-17 20.2 %
:RPS:SCOP  217->315 1v4aA1  a.24.16.4 * 1e-16 6.1 %
:HMM:SCOP  213->264 1d5yA1 a.4.1.8 * 2.8e-07 34.6 %
:HMM:SCOP  267->316 1d5yA2 a.4.1.8 * 3e-12 46.0 %
:RPS:PFM   276->314 PF00165 * HTH_AraC 1e-04 46.2 %
:HMM:PFM   224->263 PF00165 * HTH_AraC 5.3e-05 22.5 40/42  
:HMM:PFM   277->315 PF00165 * HTH_AraC 1.8e-11 42.1 38/42  
:BLT:SWISS 206->314 ARAC_SALTY 2e-12 33.0 %
:PROS 268->310|PS00041|HTH_ARAC_FAMILY_1
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABE37304.1 GT:GENE ABE37304.1 GT:PRODUCT transcriptional regulator, AraC family GT:DATABASE GIB00345CH01 GT:ORG rpal2 GB:ACCESSION GIB00345CH01 GB:LOCATION complement(75240..76196) GB:FROM 75240 GB:TO 76196 GB:DIRECTION - GB:PRODUCT transcriptional regulator, AraC family GB:PROTEIN_ID ABE37304.1 GB:DB_XREF GI:91681002 InterPro:IPR000005 LENGTH 318 SQ:AASEQ MRRRFDSNWRTALAEPKRVSAVDRASEQVGRPPRSAIRSWSQRKIEVGYWSIDWPGVVQREMSLSTKAFCELSMVLTPVDDMTLLCGETTIRTGPLQSGRFRVAPANTTLSASVSASSTVKFLKVFFAEETARAIGSAIHSHSIDIEMEDPMLGTDDPFLVSLGREVVENINDPRPTSRAFAEEAAILMAGRVVSHYSTARYCTSMAVRSRGLDPDLDRALQLMRDHICGTIDLGMLATSVDMPAFSFVRAFQKKYGLSPIRYHRHMRMEQAKTLLSTTAFPIGKISNMLGFSESSHFVSAFRKATGRTPLAYRRTRS GT:EXON 1|1-318:0| BL:SWS:NREP 1 BL:SWS:REP 206->314|ARAC_SALTY|2e-12|33.0|109/281| PROS 268->310|PS00041|HTH_ARAC_FAMILY_1|PDOC00040| SEG 108->120|ttlsasvsasstv| BL:PDB:NREP 1 BL:PDB:REP 213->314|2k9sA|9e-12|30.4|102/107| RP:PDB:NREP 1 RP:PDB:REP 214->317|1bl0A|4e-17|20.2|104/116| RP:PFM:NREP 1 RP:PFM:REP 276->314|PF00165|1e-04|46.2|39/40|HTH_AraC| HM:PFM:NREP 2 HM:PFM:REP 224->263|PF00165|5.3e-05|22.5|40/42|HTH_AraC| HM:PFM:REP 277->315|PF00165|1.8e-11|42.1|38/42|HTH_AraC| GO:PFM:NREP 4 GO:PFM GO:0003700|"GO:transcription factor activity"|PF00165|IPR000005| GO:PFM GO:0005622|"GO:intracellular"|PF00165|IPR000005| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF00165|IPR000005| GO:PFM GO:0043565|"GO:sequence-specific DNA binding"|PF00165|IPR000005| RP:SCP:NREP 1 RP:SCP:REP 217->315|1v4aA1|1e-16|6.1|99/151|a.24.16.4| HM:SCP:REP 213->264|1d5yA1|2.8e-07|34.6|52/54|a.4.1.8|1/2|Homeodomain-like| HM:SCP:REP 267->316|1d5yA2|3e-12|46.0|50/0|a.4.1.8|2/2|Homeodomain-like| OP:NHOMO 367 OP:NHOMOORG 240 OP:PATTERN -------------------------------------------------------------------- ----1---------1----------2-------111-------1----------------1---1---1---------------------41---------------21-----------------------------------2-512------------------11--------------1-------------------11---11-11--112-1121-------11B--------------------1--------------------1--------11----------------1---------------------1----111--2----1----11-1-1---11--11-1---------2---1--1--------1152---12-12-----------1-111-12--41--6--33325416532---1111-1111---------1-1----1--------------------------------4-------233331-------452222-1333112---1-2-------1-2---------------------1-----------1--1-----1-1----1-1------------------------------3211111-2-----------------1--2-------------211--2-1111111111-11-1111111111111111232-----1111111111111111111-1111--111-11-11111---1-----------2-2---------------------1---1-34431212111141111------------11--------11--11111----------------------------------------------------------------1- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 110 STR:RPRED 34.6 SQ:SECSTR ################################################################################################################################################################################################################ccTTHHHHHHHHHHHHHTTTTcccccHHHHHHccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccHHHHHHHTTcccHHHHHHHHHHHHcccHHHHHTccc DISOP:02AL 1-2,6-6,24-35,198-215,314-319| PSIPRED cccHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHccccEEEEEEEcccccccccccccccccEEEEEEcccccccEEcccccEEEEccccccEEEEEccccHHHHccccccEEEEEEEEEcHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHcccccccHHHHHHHHcccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHccccHHHHHHHHHHHHcccHHHHHHHcc //