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Rhodopseudomonas palustris BisB5 (rpal2)
Gene : ABE37327.1
DDBJ      :             DNA polymerase III, subunits gamma and tau
Swiss-Prot:             

Homologs  Archaea  47/68 : Bacteria  904/915 : Eukaryota  189/199 : Viruses  2/175   --->[See Alignment]
a.80.1c.37.1
:624 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   29->400 1jr3A PDBj 4e-71 42.0 %
:RPS:PDB   30->120 2c9oB PDBj 3e-10 18.7 %
:RPS:PDB   106->320 3c58A PDBj 2e-31 12.8 %
:RPS:SCOP  29->274 1jr3A2  c.37.1.20 * 3e-72 51.7 %
:RPS:SCOP  281->390 1jqjC1  a.80.1.1 * 2e-14 20.0 %
:HMM:SCOP  29->274 1jr3A2 c.37.1.20 * 9.7e-56 28.3 %
:HMM:SCOP  275->402 1jr3A1 a.80.1.1 * 6.8e-32 33.3 %
:RPS:PFM   32->97 PF05496 * RuvB_N 2e-04 36.4 %
:RPS:PFM   92->256 PF06068 * TIP49 6e-05 27.6 %
:RPS:PFM   266->390 PF12169 * DNA_pol3_gamma3 1e-17 40.0 %
:RPS:PFM   485->594 PF12362 * DUF3646 5e-25 51.8 %
:HMM:PFM   264->406 PF12169 * DNA_pol3_gamma3 2.3e-57 54.5 143/143  
:HMM:PFM   484->595 PF12362 * DUF3646 4.8e-41 48.2 112/117  
:HMM:PFM   68->204 PF00004 * AAA 6.7e-12 27.4 106/130  
:HMM:PFM   32->92 PF03215 * Rad17 0.00015 27.9 61/498  
:BLT:SWISS 29->400 DPO3X_ECOLI 1e-70 42.0 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABE37327.1 GT:GENE ABE37327.1 GT:PRODUCT DNA polymerase III, subunits gamma and tau GT:DATABASE GIB00345CH01 GT:ORG rpal2 GB:ACCESSION GIB00345CH01 GB:LOCATION complement(101648..103522) GB:FROM 101648 GB:TO 103522 GB:DIRECTION - GB:PRODUCT DNA polymerase III, subunits gamma and tau GB:PROTEIN_ID ABE37327.1 GB:DB_XREF GI:91681025 InterPro:IPR000862 InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR012763 LENGTH 624 SQ:AASEQ MTDSGPPAIPSGDSEQTGLGLGAAPAGAYRVLARKYRPNSFEDLIGQEAVVRTVSNAFDTGRIPQAWILTGVRGVGKTTTARILARALNYEMPDGSVKGPTIHMPVHGVHCKAIMESRHMDVLEMDAASHTGVDDVRQINDSVRYAPASARYKVYIIDEVHMLSTAAFNAFLKTLEEPPEHAKFVFATTEIRKVPVTVLSRCQRFDLRRVEADVLMKHLAGIAAKEGVEVEPEALGIIARAAEGSVRDSLSLFDQAIAHAAGLVRADQVRQMLGLADRTRVIELFDALARGDIASAFQEFRDQYDTGADPVVVLSDLAEFVNFVTRVKIVPATADNVAFGETERLRGRDFAAKLSMRVLSRMWQMLLKGIAEVQGATRPAAAAEMVLVRIAYAADLPTPDEALRMLAQDGGSATPLPSGGGAAPRGASSPPVSAASVASAYAAPAAAAMPPRSAPTMARGGADSMARPQISAPAAAPQQDAALKITTFPQLVALASEKRDVMTRMALEADVRLVRIDDGRLELALERTASRSLINDLGRKLEQWTGRRWTVIVSNEPGQPTLRSQSEAQKNERERAAESDPRVREVLAKFPGAKFEVRRLATDLAEADAGIEDPAEPVDDDDES GT:EXON 1|1-624:0| BL:SWS:NREP 1 BL:SWS:REP 29->400|DPO3X_ECOLI|1e-70|42.0|362/643| SEG 18->28|glglgaapaga| SEG 417->455|psgggaaprgassppvsaasvasayaapaaaampprsap| SEG 466->482|arpqisapaaapqqdaa| SEG 612->623|edpaepvdddde| BL:PDB:NREP 1 BL:PDB:REP 29->400|1jr3A|4e-71|42.0|362/366| RP:PDB:NREP 2 RP:PDB:REP 30->120|2c9oB|3e-10|18.7|91/393| RP:PDB:REP 106->320|3c58A|2e-31|12.8|211/269| RP:PFM:NREP 4 RP:PFM:REP 32->97|PF05496|2e-04|36.4|66/232|RuvB_N| RP:PFM:REP 92->256|PF06068|6e-05|27.6|163/394|TIP49| RP:PFM:REP 266->390|PF12169|1e-17|40.0|125/136|DNA_pol3_gamma3| RP:PFM:REP 485->594|PF12362|5e-25|51.8|110/117|DUF3646| HM:PFM:NREP 4 HM:PFM:REP 264->406|PF12169|2.3e-57|54.5|143/143|DNA_pol3_gamma3| HM:PFM:REP 484->595|PF12362|4.8e-41|48.2|112/117|DUF3646| HM:PFM:REP 68->204|PF00004|6.7e-12|27.4|106/130|AAA| HM:PFM:REP 32->92|PF03215|0.00015|27.9|61/498|Rad17| GO:PFM:NREP 5 GO:PFM GO:0006281|"GO:DNA repair"|PF05496|IPR008824| GO:PFM GO:0006310|"GO:DNA recombination"|PF05496|IPR008824| GO:PFM GO:0009378|"GO:four-way junction helicase activity"|PF05496|IPR008824| GO:PFM GO:0003678|"GO:DNA helicase activity"|PF06068|IPR010339| GO:PFM GO:0005524|"GO:ATP binding"|PF06068|IPR010339| RP:SCP:NREP 2 RP:SCP:REP 29->274|1jr3A2|3e-72|51.7|240/240|c.37.1.20| RP:SCP:REP 281->390|1jqjC1|2e-14|20.0|110/117|a.80.1.1| HM:SCP:REP 29->274|1jr3A2|9.7e-56|28.3|237/0|c.37.1.20|1/1|P-loop containing nucleoside triphosphate hydrolases| HM:SCP:REP 275->402|1jr3A1|6.8e-32|33.3|126/126|a.80.1.1|1/1|DNA polymerase III clamp loader subunits, C-terminal domain| OP:NHOMO 1815 OP:NHOMOORG 1142 OP:PATTERN 11-11-11111111111211112-211-111111----11111-12-21-1--1-----1-1111-1- 1111111222212222222-22222222222222221222111222212111222122112222122122111112222222121111111111111-111111111111111111111222222111-1112111211222222212411111111111111112133111111111112111111122212222222223222223212221122211132111111112211111111111111111111212111111111111222221111111111111111111111111111111111121111111111111122212222223313122111111222112222211222222112222111122222122221222222222222122222222222-12311212212-2222222222222222211122222132222222212222221112111111111111111111111212111212221111111111121111111111111111121111122211111211111211211111333333311111112222111111111122222222211111122111111111111111-111111111112222211111111111111111111111111-121121111111-212111111111111-1111111111111111111111211111-111111111111111111111111122222212222221211111222222221111221111111111111111111112111111111111111111111111112111122222111112122222222111111211111111111111111111111-11111111111111111111111121212111 2223331-31322233333233312323333233331333333313332233232222333333233333332323333323333233-36333334333132431225332322211-112223212-463-212-22-311311-1-12-121342122223321222223223443R23132675C3852132222 --------------------------------------------------------------------------------------------------------------------------------------------------------------------------1--1- STR:NPRED 372 STR:RPRED 59.6 SQ:SECSTR ############################cccHHHHTccccGGGccccHHHHHHHHHHHHTTcccccEEEEccTTccHHHHHHHHHHHHHGGGccTTcHcEcccccHHHHHHHHHHTTccccEEEEccGGTTcHHHHHHHHTTccEEEEEEETTEEEEETEEEEEEcTTTcEEEEEcTTccEEEEEccccEEEEEcTTcccEEEEEEGGGHHHHHHHHTccccccTTTccHHHHHHHHHHHHHTccccHHHHHHTccccccccHHHHHHHHHHTTccTTccGGGccHHHHHHHHHHHHHHHHHHHHTcccccccTTTTccGHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHTcTTHHHTTcHHHHTTTcccHHHHHHHHHHHHHTcccccccc################################################################################################################################################################################################################################ DISOP:02AL 1-20,399-430,451-479,559-573,613-625| PSIPRED ccccccccccccccccccccccccccccHHHHHHHHccccHHHHcccHHHHHHHHHHHHccccccEEEEEccccccHHHHHHHHHHHHcccccccccccccccccccccHHHHHHccccccEEEEcccccccHHHHHHHHHHHHHHHHHcccEEEEEEcHHHccHHHHHHHHHHHHcccccEEEEEEEccHHHccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccHHHHHHHHccccHHHHHHHHHHHHcccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccccHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHccHHcccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHccHHHHHHHHHcccccccccccEEEEEcccccccHHHHHHHHHHHHccccEEEEEEcccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHccccEEEEEEcccccccHHcccccccccccccccc //