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Rhodopseudomonas palustris BisB5 (rpal2)
Gene : ABE37464.1
DDBJ      :             transcriptional regulator, LysR family
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  598/915 : Eukaryota  4/199 : Viruses  0/175   --->[See Alignment]
a.4.5c.94.1
:312 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   6->73 3hhgG PDBj 4e-06 33.8 %
:BLT:PDB   88->303 1i6aA PDBj 4e-28 32.1 %
:RPS:PDB   1->110 1b9nA PDBj 2e-18 14.7 %
:RPS:PDB   92->306 1a40A PDBj 3e-07 9.4 %
:RPS:SCOP  3->105 1b9mA1  a.4.5.8 * 6e-19 17.5 %
:RPS:SCOP  88->303 1i69A  c.94.1.1 * 9e-30 33.5 %
:HMM:SCOP  1->113 1b9mA1 a.4.5.8 * 3.2e-23 36.8 %
:HMM:SCOP  86->302 1uthA_ c.94.1.1 * 1.9e-34 31.1 %
:RPS:PFM   4->62 PF00126 * HTH_1 3e-05 49.2 %
:HMM:PFM   88->299 PF03466 * LysR_substrate 6.7e-44 33.0 203/209  
:HMM:PFM   4->63 PF00126 * HTH_1 1.2e-22 48.3 60/60  
:BLT:SWISS 2->303 OXYR_ECOLI 2e-45 34.6 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABE37464.1 GT:GENE ABE37464.1 GT:PRODUCT transcriptional regulator, LysR family GT:DATABASE GIB00345CH01 GT:ORG rpal2 GB:ACCESSION GIB00345CH01 GB:LOCATION 257482..258420 GB:FROM 257482 GB:TO 258420 GB:DIRECTION + GB:PRODUCT transcriptional regulator, LysR family GB:PROTEIN_ID ABE37464.1 GB:DB_XREF GI:91681162 InterPro:IPR000847 InterPro:IPR005119 LENGTH 312 SQ:AASEQ MVTLRQLRYLSALARHGHFGRAAESCAVTQPALSMQIAELERTLGVKVVERRPGEVFLTEIGREIARRGDDLLTASRDLVDFARHRAQPLTGRLTLGVIPSLAPYLLPKVLPLLQRRFPELRLELRESQTRQLVTDIGSGALDAALLALPAGNRDLDAIALFDDVFLLAVPADDPRPESATVTVDEIDQSRLILLEDGHCLRDQALAFCATGRNRAINLGGAGTATFGASSLTTVIQMVAAGYGVTLIPQIAAEIERRDARVKFLQLRRPQPGRSIGLAFRKTSPRRSDFEALGDVVTEGVSGKAAREEASA GT:EXON 1|1-312:0| BL:SWS:NREP 1 BL:SWS:REP 2->303|OXYR_ECOLI|2e-45|34.6|295/305| SEG 111->127|lpllqrrfpelrlelre| SEG 141->151|aldaallalpa| SEG 219->234|lggagtatfgassltt| BL:PDB:NREP 2 BL:PDB:REP 6->73|3hhgG|4e-06|33.8|68/294| BL:PDB:REP 88->303|1i6aA|4e-28|32.1|209/212| RP:PDB:NREP 2 RP:PDB:REP 1->110|1b9nA|2e-18|14.7|109/258| RP:PDB:REP 92->306|1a40A|3e-07|9.4|213/321| RP:PFM:NREP 1 RP:PFM:REP 4->62|PF00126|3e-05|49.2|59/60|HTH_1| HM:PFM:NREP 2 HM:PFM:REP 88->299|PF03466|6.7e-44|33.0|203/209|LysR_substrate| HM:PFM:REP 4->63|PF00126|1.2e-22|48.3|60/60|HTH_1| GO:PFM:NREP 2 GO:PFM GO:0003700|"GO:transcription factor activity"|PF00126|IPR000847| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF00126|IPR000847| RP:SCP:NREP 2 RP:SCP:REP 3->105|1b9mA1|6e-19|17.5|103/122|a.4.5.8| RP:SCP:REP 88->303|1i69A|9e-30|33.5|203/206|c.94.1.1| HM:SCP:REP 1->113|1b9mA1|3.2e-23|36.8|106/0|a.4.5.8|1/1|"Winged helix" DNA-binding domain| HM:SCP:REP 86->302|1uthA_|1.9e-34|31.1|209/0|c.94.1.1|1/1|Periplasmic binding protein-like II| OP:NHOMO 1852 OP:NHOMOORG 602 OP:PATTERN -------------------------------------------------------------------- 223-711233221163311-112226111111-2223523-123---2----2-21----11112-53442--------111211---111--111---11211131111---------------1----------23312---31221322322221111112323324111111111111111111---113333333441333342--44343341112---11111299-------------------------------1-------1-------------1--11111111111-------------111---111----4111111-1----------------1-1--6512---11---1---1--25221-----235333312422222322233233-22322D58441-7442223493558832143624331254344444434423233------------------------------234212B859DIIKHD67777CBIE666546FBJADBB-187362232C553A645341114311111-11111343--1--1-11311--1--222--1332332-1-------------------------22642211422223222211332222142232--11323------63531355554544455-5546634556546554552354111233143334343324233643344431-311111111111---211111111111258111111111111111222321111172BBBC6C6845646279921111111123446333335744423535333331111--3-11---------------------------------------------------2- --------------------------------------------------------------------------------------------------------------------------------------------------------------2----------------1------------2-----1---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 312 STR:RPRED 100.0 SQ:SECSTR EEcHHHHHHHHHHHHHccHHHHHHHHTccHHHHHHHHHHHHHHHTcccETEEcccEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHcccccTTcHHHHHHHHTcccTTccEEEEEcccEEEEEETTcccEEEEEccHHHHHHHTccTTcEEEEEEcGGGcEEEccHHHHTTccEEEEEEEEEEEEcccEEEEEEEcTTccEEEEEEEGGGcTTccTTccccccccccEEEcHHHHHHHHHHHcTTEEEEEEHHHHHTTTcEEcEEEcTTccEEcccHHHHHHHTTTccTTTcccccccccccTTcccHHHHHc DISOP:02AL 86-87,300-313| PSIPRED cccHHHHHHHHHHHHHccHHHHHHHHcccccHHHHHHHHHHHHHccEEEEEccccEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEEEcHHHHHHHHHHHHHHHHHcHHHHHHHHcccHHHHHHHHHccccccEEEEcccccccEEEEEEEEccEEEEEcccccccccccccHHHHccccEEEcccccHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHccccEEEcHHHHHHHHcccccEEEEEccccccEEEEEEEEcccccccHHHHHHHHHHHHHHHHccccccccc //