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Rhodopseudomonas palustris BisB5 (rpal2)
Gene : ABE37473.1
DDBJ      :             NusA antitermination factor
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  909/915 : Eukaryota  7/199 : Viruses  0/175   --->[See Alignment]
a.60.3a.60.4b.40.4d.202.1d.52.3
:540 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   10->344 1hh2P PDBj 4e-72 40.8 %
:BLT:PDB   365->435 1wclA PDBj 7e-09 42.6 %
:RPS:PDB   45->137 2coiB PDBj 2e-14 12.0 %
:RPS:PDB   128->277 2a1aA PDBj 8e-26 12.9 %
:RPS:PDB   259->346 2cxcA PDBj 5e-26 22.1 %
:RPS:PDB   365->517 2bcrA PDBj 3e-12 9.8 %
:RPS:SCOP  9->131 1hh2P4  d.202.1.1 * 3e-32 34.1 %
:RPS:SCOP  137->203 1k0rA1  b.40.4.5 * 1e-19 38.8 %
:RPS:SCOP  205->281 1hh2P2  d.52.3.1 * 4e-21 53.2 %
:RPS:SCOP  283->349 1hh2P3  d.52.3.1 * 5e-11 50.8 %
:RPS:SCOP  363->428 1lb2B  a.60.3.1 * 7e-07 16.7 %
:HMM:SCOP  6->131 1hh2P4 d.202.1.1 * 5.2e-38 45.2 %
:HMM:SCOP  136->203 1k0rA1 b.40.4.5 * 8.1e-21 50.0 %
:HMM:SCOP  204->281 1hh2P2 d.52.3.1 * 8.3e-33 64.1 %
:HMM:SCOP  283->350 1k0rA3 d.52.3.1 * 9e-17 48.5 %
:HMM:SCOP  358->425 1u9lA_ a.60.4.2 * 1.2e-15 38.2 %
:HMM:SCOP  433->510 1u9lA_ a.60.4.2 * 0.00018 35.0 %
:RPS:PFM   9->129 PF08529 * NusA_N 1e-20 45.5 %
:RPS:PFM   138->196 PF00575 * S1 8e-04 35.6 %
:RPS:PFM   376->459 PF00562 * RNA_pol_Rpb2_6 6e-04 32.1 %
:HMM:PFM   9->130 PF08529 * NusA_N 3.5e-42 48.4 122/122  
:HMM:PFM   137->199 PF00575 * S1 9.1e-11 31.7 63/74  
:HMM:PFM   310->349 PF00013 * KH_1 7.1e-05 32.4 34/57  
:BLT:SWISS 8->472 NUSA_RICCN e-138 52.5 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABE37473.1 GT:GENE ABE37473.1 GT:PRODUCT NusA antitermination factor GT:DATABASE GIB00345CH01 GT:ORG rpal2 GB:ACCESSION GIB00345CH01 GB:LOCATION complement(270895..272517) GB:FROM 270895 GB:TO 272517 GB:DIRECTION - GB:PRODUCT NusA antitermination factor GB:PROTEIN_ID ABE37473.1 GB:DB_XREF GI:91681171 InterPro:IPR003029 InterPro:IPR004087 InterPro:IPR010213 InterPro:IPR010214 LENGTH 540 SQ:AASEQ MAVSANKLELLQIADAVAREKSIDRGIVIAAMEDAIAKAARARYGSETDVHAEIDAKKGELRLSRHMLVVDKVENAANQISLKDAQRANPGAQIGDTIADTLPPLEYGRIAAQSAKQVIVQKVREAERDRQYMEFKDRIGDVVNGVVKRVEYGSVIVDLGRGEAIVRRDEMLPRESFRNGDRVRAYIFDVRRETRGPQIFLSRTHPQFMAKLFQQEVPEIYDGIVEIKAVARDPGSRAKIGVVSRDSSVDPVGACVGMRGSRVQAVVNELQGEKIDIIPWSPDIATFVVNALAPAEVSKVVIDEDRERIEVVVPDTNNQLSLAIGRRGQNVRLASQLTGWDIDILTETEESERRQADFENSTRVFMEALNVDEVVGQLLASEGFTSVEELAMVDIRELASIEGFDEETATELQARAAEYLDRVETELEARRQELGVEDALKDVPGVTSKMLVKLGEGDVKTVEDLAGCATDDLVGWTERKEGAEPVKYAGILDGVEMTRDDAEHLIMQARVKAGWITEEELAQTADKGEDAGAETEGAAE GT:EXON 1|1-540:0| BL:SWS:NREP 1 BL:SWS:REP 8->472|NUSA_RICCN|e-138|52.5|463/503| SEG 30->42|aamedaiakaara| SEG 528->539|gedagaetegaa| BL:PDB:NREP 2 BL:PDB:REP 10->344|1hh2P|4e-72|40.8|333/344| BL:PDB:REP 365->435|1wclA|7e-09|42.6|68/76| RP:PDB:NREP 4 RP:PDB:REP 45->137|2coiB|2e-14|12.0|92/356| RP:PDB:REP 128->277|2a1aA|8e-26|12.9|147/161| RP:PDB:REP 259->346|2cxcA|5e-26|22.1|86/138| RP:PDB:REP 365->517|2bcrA|3e-12|9.8|153/325| RP:PFM:NREP 3 RP:PFM:REP 9->129|PF08529|1e-20|45.5|121/122|NusA_N| RP:PFM:REP 138->196|PF00575|8e-04|35.6|59/74|S1| RP:PFM:REP 376->459|PF00562|6e-04|32.1|84/386|RNA_pol_Rpb2_6| HM:PFM:NREP 3 HM:PFM:REP 9->130|PF08529|3.5e-42|48.4|122/122|NusA_N| HM:PFM:REP 137->199|PF00575|9.1e-11|31.7|63/74|S1| HM:PFM:REP 310->349|PF00013|7.1e-05|32.4|34/57|KH_1| GO:PFM:NREP 7 GO:PFM GO:0003700|"GO:transcription factor activity"|PF08529|IPR013735| GO:PFM GO:0005515|"GO:protein binding"|PF08529|IPR013735| GO:PFM GO:0031554|"GO:regulation of transcription termination"|PF08529|IPR013735| GO:PFM GO:0003723|"GO:RNA binding"|PF00575|IPR003029| GO:PFM GO:0003677|"GO:DNA binding"|PF00562|IPR007120| GO:PFM GO:0003899|"GO:DNA-directed RNA polymerase activity"|PF00562|IPR007120| GO:PFM GO:0006350|"GO:transcription"|PF00562|IPR007120| RP:SCP:NREP 5 RP:SCP:REP 9->131|1hh2P4|3e-32|34.1|123/126|d.202.1.1| RP:SCP:REP 137->203|1k0rA1|1e-19|38.8|67/76|b.40.4.5| RP:SCP:REP 205->281|1hh2P2|4e-21|53.2|77/78|d.52.3.1| RP:SCP:REP 283->349|1hh2P3|5e-11|50.8|65/68|d.52.3.1| RP:SCP:REP 363->428|1lb2B|7e-07|16.7|66/72|a.60.3.1| HM:SCP:REP 6->131|1hh2P4|5.2e-38|45.2|126/126|d.202.1.1|1/1|Transcription factor NusA, N-terminal domain| HM:SCP:REP 136->203|1k0rA1|8.1e-21|50.0|68/0|b.40.4.5|1/1|Nucleic acid-binding proteins| HM:SCP:REP 204->281|1hh2P2|8.3e-33|64.1|78/0|d.52.3.1|1/1|Prokaryotic type KH domain (KH-domain type II)| HM:SCP:REP 283->350|1k0rA3|9e-17|48.5|66/67|d.52.3.1|1/1|Prokaryotic type KH domain (KH-domain type II)| HM:SCP:REP 358->425|1u9lA_|1.2e-15|38.2|68/0|a.60.4.2|1/2|Rad51 N-terminal domain-like| HM:SCP:REP 433->510|1u9lA_|0.00018|35.0|60/0|a.60.4.2|2/2|Rad51 N-terminal domain-like| OP:NHOMO 917 OP:NHOMOORG 916 OP:PATTERN -------------------------------------------------------------------- 1111111111111111111-11111111111111111111111111111111111111111111111111111111111111111111111111111-11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111-11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111-1111111111111111111111111111-11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111-11111111111111111111111111111111 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------1-----1---1-111-----1---------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 508 STR:RPRED 94.1 SQ:SECSTR #########cHHHHHHHcccccGGGGGGcTTccHHHHHHHGGGEcHHHHHHHHHHHHHcccEEEEccccHHHHHHHHHTTcEEEEEEEccccccTcEEEccTTcccTTEEEETTEEEEcccEEEEEccccccccccccTTcEEEEEEEEEcccEEEEEETTTTTcTccEEEEEcccccTTcEEEEEEEEEETTTTEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHTccHHHHHHHTHHHHHHHHHHHHHHGGGHHHHHHHHHHccEEEEEEccccHHHHHHHHcTTccEEEEEEEEETTEEEEEEcTHGTTHHHHHcGGGHHHHHHHHHHHHHHcEEEcccccccTTHHHHHHHHHHTTcTTccHHHHHHHHHHHHcccHHHHTccHHHHTTcTTccHHHHHHHHHHTTcHHTcccGGGGcccTTHHHHHHHHTcTTccHHHHHHHHHTTcccHHHHHHHccccHHHHHHHHTTTGGGccEEHHHHHHHHHHHHHHHHHHcTTcEEEEc####################### DISOP:02AL 1-5,349-359,426-439,521-541| PSIPRED ccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccccccEEEEEcccccEEEEEEEEEEEccccccccEEcHHHHHHHccccccccEEEEEccHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEEEEEccEEEEEEcccEEEEcHHHcccccccccccEEEEEEEEEEEcccccEEEEEEccHHHHHHHHHHHcHHHHccEEEEEEEEEccccEEEEEEEEccccccEEEEEEcccHHHHHHHHHHHccccEEEEEccccHHHHHHHHcccEEEEEEEEcccccEEEEEEcccHHHHHHHHccccHHHHHHHHHHccEEEEEEHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHcccccHHHHHcccHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHcccccHHHHHHHHHcccEEEHHHHcccHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHccccccHHHccccccccccccccccccc //