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Rhodopseudomonas palustris BisB5 (rpal2)
Gene : ABE37540.1
DDBJ      :             ATP-dependent helicase HrpB
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  473/915 : Eukaryota  198/199 : Viruses  1/175   --->[See Alignment]
c.37.1c.92.1d.258.1
:825 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:RPS:PDB   27->166 3b6eA PDBj 1e-11 15.0 %
:RPS:PDB   156->391 1ak1A PDBj 8e-32 9.4 %
:RPS:SCOP  29->129 1q1lA  d.258.1.1 * 1e-12 14.9 %
:RPS:SCOP  171->392 1hrkA  c.92.1.1 * 1e-25 7.3 %
:HMM:SCOP  20->167 1a1vA1 c.37.1.14 * 3.7e-30 41.9 %
:HMM:SCOP  186->467 1yksA2 c.37.1.14 * 9.6e-54 34.2 %
:RPS:PFM   679->811 PF08482 * HrpB_C 3e-39 60.2 %
:HMM:PFM   679->811 PF08482 * HrpB_C 8.7e-55 57.1 133/133  
:HMM:PFM   397->485 PF04408 * HA2 5.9e-17 29.5 88/101  
:HMM:PFM   248->336 PF00271 * Helicase_C 8.7e-14 31.0 71/78  
:HMM:PFM   24->173 PF00270 * DEAD 3.5e-09 21.5 144/167  
:BLT:SWISS 31->821 HRPB_ECOLI e-151 44.6 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABE37540.1 GT:GENE ABE37540.1 GT:PRODUCT ATP-dependent helicase HrpB GT:DATABASE GIB00345CH01 GT:ORG rpal2 GB:ACCESSION GIB00345CH01 GB:LOCATION 349371..351848 GB:FROM 349371 GB:TO 351848 GB:DIRECTION + GB:PRODUCT ATP-dependent helicase HrpB GB:PROTEIN_ID ABE37540.1 GB:DB_XREF GI:91681238 InterPro:IPR001410 InterPro:IPR001650 InterPro:IPR007502 InterPro:IPR010225 InterPro:IPR011545 LENGTH 825 SQ:AASEQ MHLSRSFDTPLPIDDALADLTSALAGNSTAVLVAPPGAGKTTRVPLALLDQPWLGTKKIIMLEPRRIAARASAERMAKTLGERAGETVGYRVRFGSKISRATRIEVVTEGIFTRQILDDPELAGIGAVLFDEFHERSLDADLGLALARDAQQGLREDLRILVMSATIDGARVARLLGDAPVVESLGRAFPVETRYLGRRSDAPMERQMAEAIAAALRSDAGSVLAFLPGAAEIRRTETMLRERVHDAAIEIVPLFGALDAAVQDRAIQPAPKGSRKVVLATSIAETSLTIEGVRIVVDCGLSRVPRYEPDIGLTRLETVRASRAAVDQRRGRAGRIEPGVCYRLWDEPQTASLPAYTQPEILSADLTSLLLDLAQWGVTDPATLAFLDPPPGPALKEARELLAELGALDADGRITDEGRALRAMALPPRLARMIVDAARLDHGEEAAEIAAILTERGLGGDSVDLDHRRDQFRRDRSQRAMSARQMAQRWAGQASSPSPQGGEELSTGVLLAFAFPDRVAKNRGNGSFVLANGRGAAIEQTSALARAPYLAVAELTGTAAQGRILLAAPITLAEIEQHFAGQITDADDVSFDRAAMALRARRRRALHAITLSEAPQALTPSAETAQVLADGLIAAGLDRLPWSKQLQQWRGRVMFLRKAEGEPWPDLSDSALAEQREDWLVPALFDKAGLKDVSAGDLSDALMNLLPWDLRARLDREAPTHFEAPTGSRLPIDYEAEQGPTIAVRLQELFGLTSHPSVAGGAVPLVLELLSPAHRPVQVTRDLPGFWRGSYAAVRADLRGRYPRHPWPEDPAGAPPTRRAKPKGT GT:EXON 1|1-825:0| BL:SWS:NREP 1 BL:SWS:REP 31->821|HRPB_ECOLI|e-151|44.6|775/809| SEG 14->25|ddaladltsala| SEG 138->155|ldadlglalardaqqglr| SEG 362->374|lsadltsllldla| SEG 394->413|alkearellaelgaldadgr| SEG 419->433|ralramalpprlarm| SEG 444->452|eeaaeiaai| SEG 464->479|dldhrrdqfrrdrsqr| SEG 593->608|raamalrarrrralha| RP:PDB:NREP 2 RP:PDB:REP 27->166|3b6eA|1e-11|15.0|140/182| RP:PDB:REP 156->391|1ak1A|8e-32|9.4|234/308| RP:PFM:NREP 1 RP:PFM:REP 679->811|PF08482|3e-39|60.2|133/133|HrpB_C| HM:PFM:NREP 4 HM:PFM:REP 679->811|PF08482|8.7e-55|57.1|133/133|HrpB_C| HM:PFM:REP 397->485|PF04408|5.9e-17|29.5|88/101|HA2| HM:PFM:REP 248->336|PF00271|8.7e-14|31.0|71/78|Helicase_C| HM:PFM:REP 24->173|PF00270|3.5e-09|21.5|144/167|DEAD| RP:SCP:NREP 2 RP:SCP:REP 29->129|1q1lA|1e-12|14.9|101/336|d.258.1.1| RP:SCP:REP 171->392|1hrkA|1e-25|7.3|218/359|c.92.1.1| HM:SCP:REP 20->167|1a1vA1|3.7e-30|41.9|136/136|c.37.1.14|1/1|P-loop containing nucleoside triphosphate hydrolases| HM:SCP:REP 186->467|1yksA2|9.6e-54|34.2|266/0|c.37.1.14|1/1|P-loop containing nucleoside triphosphate hydrolases| OP:NHOMO 3347 OP:NHOMOORG 672 OP:PATTERN -------------------------------------------------------------------- 1-1-2222222212111----1--11------1-1-1111-2122121111-222221--221222222211111111----------------------------2-1------------------------------------------------111111---------1-----1----111---------------------------------------------11-------------------------------------------------------------------------------------------------------------------------1------------------1-21111-----1-11111111111-1-2--11-11-1111111111--1111111111111111-11111111111111111111111111------------------------------11111111111111111111111111111111111111-1111111111111111111111111111111111111112121111--111-11111111111112211------------------------1--222222222222222222222222223233--11222------22222222222222222-2222222222222122222222222222222222222222222222122221-222222212222--11---------12214111111-1111111111111111112222222222224224422111111-1122333221223333322222222222222--2-11----1111111111-------------------------------------22 5857A891TCD5A6E789899998599999989AA99999799999AA87AB8A99988966777777277577477477767778A9-BH98A99AAA98BA99A4CP4MJTHOIODDEEEFETODUAq*H6SPbC9EDKDGLHBGDDBJBERBGJHFGUX9DADEFDFlEBGA68DK*FEGACDBEJ9KG8A7CDBC --------------------------------------------------------------------------------------------------------------------------------------------------------------------------1---- STR:NPRED 383 STR:RPRED 46.4 SQ:SECSTR ##########ccEEEEcccTTcTTcccEEEEEEccTTccHHHHHHHHHHHHHHHHcccccHHHHHHHTTHHHHHHHHEEcccccTTEEccEEEEHHHHHHHHcEEEEccccEEEEcTTccEEEEEcHHHHHccccccccTTccccccccccHHHHEEEEEEEEEcGGGHHHHHHHHTTTcccccHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHEEEEEEEEEcccccHHHHHHHHHHTTccEEEEEEEccccccTTTHHHHHHHHHHcccEEEEccccTTcHHHHHHHHHHHHHHHHHccHHHHHcEEEEEEEEcccGGGGGGTccHHHHHHHHHHHHHHHHTcccEEEEEEcccccccccccccHHHHHHHHHHHHcccEEEEEccc################################################################################################################################################################################################################################################################################################################################################################################################################################################ DISOP:02AL 1-3,471-501,618-618,818-826| PSIPRED ccccHHHcccccHHHHHHHHHHHHHcccEEEEEEcccccHHHHHHHHHHHHHHcccccEEEEcccHHHHHHHHHHHHHHHcccccccEEEEEcccccccccccEEEEcHHHHHHHHHccccHHcccEEEcccHHHccccccHHHHHHHHHHHccccccEEEEEEccccHHHHHHHHccccEEEEcccccEEEEEEEEcccccHHHHHHHHHHHHHHHHccccEEEEEccHHHHHHHHHHHHHcccccccEEEEEcccccHHHHHHHHHccccccEEEEEEccHHHHccccccEEEEEEcccccccccccccccEEEEEEEccHHHHHHHccccccccccEEEEEEcHHHHHHccccccccHHHHHHHHHHHHHHHcccccHHHccccccccHHHHHHHHHHHHHHccccccccccHHHHHHHHHcccHHHHHHHHHHHHcccHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHcccHHHHHccccccEEEEcccEEEEccccccccccEEEEEEccccccccEEEEEccccHHHHHHHHHHHcEEEEEEEEEHHHHHHHHHHHccEEEEEEEEcccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHcccccHHHHccccHHHHHHHHccHHHHHHHHHHcccEEEcccccEEEEEEccccccEEEEEHHHHHccccccEEccccEEEEEEEEccccccHHHHccHHHHHcccHHHHHHHHcccccccccccccccccHHHccccccc //