[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Rhodopseudomonas palustris BisB5 (rpal2)
Gene : ABE37597.1
DDBJ      :             ribosomal large subunit pseudouridine synthase D
Swiss-Prot:             

Homologs  Archaea  5/68 : Bacteria  902/915 : Eukaryota  131/199 : Viruses  0/175   --->[See Alignment]
d.265.1d.66.1
:426 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   101->424 2istA PDBj 1e-47 44.2 %
:RPS:PDB   109->418 3dh3B PDBj 3e-28 17.2 %
:RPS:SCOP  86->213 1fjgD  d.66.1.2 * 5e-11 17.1 %
:RPS:SCOP  192->418 1v9kA  d.265.1.3 * 1e-50 34.5 %
:HMM:SCOP  113->213 1c06A_ d.66.1.2 * 7.4e-20 33.0 %
:HMM:SCOP  169->423 1przA_ d.265.1.3 * 2.2e-68 43.9 %
:RPS:PFM   192->350 PF00849 * PseudoU_synth_2 1e-21 48.2 %
:HMM:PFM   186->351 PF00849 * PseudoU_synth_2 1.4e-33 34.6 156/164  
:HMM:PFM   113->159 PF01479 * S4 3.2e-09 44.7 47/48  
:BLT:SWISS 113->418 RLUD_ZYMMO 2e-61 49.1 %
:PROS 233->247|PS01129|PSI_RLU
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABE37597.1 GT:GENE ABE37597.1 GT:PRODUCT ribosomal large subunit pseudouridine synthase D GT:DATABASE GIB00345CH01 GT:ORG rpal2 GB:ACCESSION GIB00345CH01 GB:LOCATION 424666..425946 GB:FROM 424666 GB:TO 425946 GB:DIRECTION + GB:PRODUCT ribosomal large subunit pseudouridine synthase D GB:PROTEIN_ID ABE37597.1 GB:DB_XREF GI:91681295 InterPro:IPR002942 InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR006225 LENGTH 426 SQ:AASEQ MVAGGGGGDDARPLRQPQRGLGGDRNASLGAEKLIADGDENRRERQRRGQARDHHHPPHPRKQRGLFGGRFGQGGFGHAMLGFGSVFLEGSIVNDSSGHLLEVVVAGDEGSPRLDRVLATRCPALSRSRLKALILDGRVAIRGAPVRDPAYHAASGETITIDVPPPVAPEPAGEAIALEIVHEDDDIIVIDKPRGLVVHPAAGHETGTLVNALIAHCGESLSGIGGVRRPGIVHRLDKDTTGLMVAAKNDRAHQSLSAQFADHGRTGELRRGYYAFVWGAPNRIRGTIDAPIDRHPHAREKMAVRDGGREAITHWEVLETFTGRSGGEIVSLIACQLETGRTHQIRVHLAHIGHPLLGDDVYGPHFKTKASQLRPDARAALTDLGRQALHAYLLVLEHPSTGEVVAWESGLPADLKRLKAALTATE GT:EXON 1|1-426:0| BL:SWS:NREP 1 BL:SWS:REP 113->418|RLUD_ZYMMO|2e-61|49.1|289/317| PROS 233->247|PS01129|PSI_RLU|PDOC00869| SEG 37->52|dgdenrrerqrrgqar| SEG 63->77|qrglfggrfgqggfg| SEG 163->177|vpppvapepageaia| SEG 179->191|eivhedddiivid| BL:PDB:NREP 1 BL:PDB:REP 101->424|2istA|1e-47|44.2|303/321| RP:PDB:NREP 1 RP:PDB:REP 109->418|3dh3B|3e-28|17.2|238/241| RP:PFM:NREP 1 RP:PFM:REP 192->350|PF00849|1e-21|48.2|141/149|PseudoU_synth_2| HM:PFM:NREP 2 HM:PFM:REP 186->351|PF00849|1.4e-33|34.6|156/164|PseudoU_synth_2| HM:PFM:REP 113->159|PF01479|3.2e-09|44.7|47/48|S4| GO:PFM:NREP 4 GO:PFM GO:0001522|"GO:pseudouridine synthesis"|PF00849|IPR006145| GO:PFM GO:0003723|"GO:RNA binding"|PF00849|IPR006145| GO:PFM GO:0009451|"GO:RNA modification"|PF00849|IPR006145| GO:PFM GO:0009982|"GO:pseudouridine synthase activity"|PF00849|IPR006145| RP:SCP:NREP 2 RP:SCP:REP 86->213|1fjgD|5e-11|17.1|123/208|d.66.1.2| RP:SCP:REP 192->418|1v9kA|1e-50|34.5|203/227|d.265.1.3| HM:SCP:REP 113->213|1c06A_|7.4e-20|33.0|100/159|d.66.1.2|1/1|Alpha-L RNA-binding motif| HM:SCP:REP 169->423|1przA_|2.2e-68|43.9|239/252|d.265.1.3|1/1|Pseudouridine synthase| OP:NHOMO 2688 OP:NHOMOORG 1038 OP:PATTERN --------------------------------------11111------------------------- 2121111222221211111-11111111111111112111111111211111111111111111111111111111112111111222444414-211112112232324-2222222-211114111111111112222111121123233211223322213112112113111113111123311221433-3333333333333322333333333333223333334533333333333333333333-34344343334444444443333333333333333333333333333333333333333333333333332333333222232343222222324322232133141121212223132213333322222333223332322222222222223-323333332232233222222222334433333333333333333333333334222222222331122222222222222-222333332222222232222222222222222222222222222243424423232333322244233333322225431224362234221233333432475779524332122222223232333234333322444443447535888889866688-888792-3222322122244444554444444444-44444444444444444444444444543444444444444445444444431544444444444222422222222233524444455444454444444344434436333333333-33333332222222225777466666557664433333333222222433311111111121121211111-11111211111122111112212222222232 ----122-1111--11111---------------------------11-11111--1-11-12112221-22111-22-211211111-22112--1-1111121-1263412111--11-11-12-1-241-112----1121111---211311-11-122221-31-2-1-11235G966-321161627641114 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 325 STR:RPRED 76.3 SQ:SECSTR ###################################################################################################cTTTTTTHHcccEEHHHHHHHTTTcccHHHHHHHHHTTcEEETTEEccTTcEEcccccEEETTEEEccccGGGccEEEEEccccccEEEETTEcTTcccccccccTTcHHHHHTcccccEHHHHHTcccccEEccccccccEEEEEEEccTHHHHHHHcGGGcccEETTccEEEEEEEcccccHHHHHHHHcccHHHHHHHHTcccccccccccEEEEccccccccEEEEccEEEEEEccccTTHHHHHHHHTTccEEEEEEEEEEEEEEETTEEGGGcccHHEETTEEcTTccTTcEEEccHHHHHHHHHTcccccccHHHHHH## DISOP:02AL 1-9,12-26,38-61,426-427| PSIPRED cccccccccccccccccHHHccccccccccHHHHHccccHHHHHHHHHHHHHHHccccccHHHcccccccccccccccccccccHHHcccccccccccEEEEEEEcccccccHHHHHHHHHcccccHHHHHHHHHcccEEEccEEEcccccccccccEEEEEccccccccccccEEEEEEEEccccEEEEEccccEEEEccccccccHHHHHHHHHHHHHHHHcccccccEEEEcccccccEEEEEEccHHHHHHHHHHHHHccccccEEEEEEEEEEEEEccccEEEEccccccccccEEEEEccccccccEEEEEEEEcccccccccEEEEEEEEcccccHHHHHHHHHccccEEcccccccccccccccccccccHHHccccHHHHEEEEEEEEccccccEEEEEccccHHHHHHHHHHHccc //