[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Rhodopseudomonas palustris BisB5 (rpal2)
Gene : ABE37666.1
DDBJ      :             transcription termination factor Rho
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  781/915 : Eukaryota  3/199 : Viruses  0/175   --->[See Alignment]
a.140.3a.35.1b.40.4c.37.1
:421 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   4->419 1pvoA PDBj e-159 68.6 %
:RPS:PDB   52->420 2ck3D PDBj 1e-69 19.2 %
:RPS:SCOP  6->45 1a62A1  a.140.3.1 * 9e-14 42.5 %
:RPS:SCOP  51->128 1a62A2  b.40.4.5 * 1e-22 78.2 %
:RPS:SCOP  104->369 1bmfD3  c.37.1.11 * 5e-59 22.8 %
:RPS:SCOP  348->407 1x2lA1  a.35.1.7 * 2e-13 16.7 %
:HMM:SCOP  4->50 1a62A1 a.140.3.1 * 1.3e-10 51.1 %
:HMM:SCOP  51->128 1a62A2 b.40.4.5 * 1.7e-35 76.9 %
:HMM:SCOP  92->375 1e79A3 c.37.1.11 * 5.6e-76 34.7 %
:RPS:PFM   9->48 PF07498 * Rho_N 5e-07 57.5 %
:RPS:PFM   53->129 PF07497 * Rho_RNA_bind 5e-32 76.0 %
:RPS:PFM   163->362 PF00006 * ATP-synt_ab 8e-11 26.7 %
:HMM:PFM   162->367 PF00006 * ATP-synt_ab 2.9e-45 25.9 201/215  
:HMM:PFM   52->129 PF07497 * Rho_RNA_bind 1.7e-43 79.5 78/78  
:HMM:PFM   8->48 PF07498 * Rho_N 9.1e-19 56.1 41/43  
:BLT:SWISS 4->421 RHO_RHOS4 0.0 78.0 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABE37666.1 GT:GENE ABE37666.1 GT:PRODUCT transcription termination factor Rho GT:DATABASE GIB00345CH01 GT:ORG rpal2 GB:ACCESSION GIB00345CH01 GB:LOCATION 491591..492856 GB:FROM 491591 GB:TO 492856 GB:DIRECTION + GB:PRODUCT transcription termination factor Rho GB:PROTEIN_ID ABE37666.1 GB:DB_XREF GI:91681364 InterPro:IPR000194 InterPro:IPR003593 InterPro:IPR004665 InterPro:IPR011112 InterPro:IPR011113 InterPro:IPR011129 InterPro:IPR013223 LENGTH 421 SQ:AASEQ MREMKLQDLKAKTPAELVSFAEELGVENASTMRKQELMFACLKQLSAKETDIIGEGVVEVLSDGFGFLRSPDANYLPGPDDIYVSPSQIRRFGLRTGDTIEGHIRSPKEGERYFALLKVNTLNFEDPEKSKHKVNFDNLTPLFPDERFRLEIDDPTRKDLSARVIDIVAPIGKGQRALIVAPPRTGKTVLMQNIAHSITANHPECYLIVLLIDERPEEVTDMQRSVKGEVVSSTFDEPAVRHVQVAEMVIEKAKRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRPKRFFGAARNIEEGGSLTIIATALVDTGSRMDEVIFEEFKGTGNSELILDRKVSDKRTFPAIDISRSGTRKEELITDPQVLKKMYVLRRILNPMGTMDAIDFLLDKLRNTKNNSEFFESMNT GT:EXON 1|1-421:0| BL:SWS:NREP 1 BL:SWS:REP 4->421|RHO_RHOS4|0.0|78.0|418/422| BL:PDB:NREP 1 BL:PDB:REP 4->419|1pvoA|e-159|68.6|407/408| RP:PDB:NREP 1 RP:PDB:REP 52->420|2ck3D|1e-69|19.2|360/467| RP:PFM:NREP 3 RP:PFM:REP 9->48|PF07498|5e-07|57.5|40/42|Rho_N| RP:PFM:REP 53->129|PF07497|5e-32|76.0|75/75|Rho_RNA_bind| RP:PFM:REP 163->362|PF00006|8e-11|26.7|195/212|ATP-synt_ab| HM:PFM:NREP 3 HM:PFM:REP 162->367|PF00006|2.9e-45|25.9|201/215|ATP-synt_ab| HM:PFM:REP 52->129|PF07497|1.7e-43|79.5|78/78|Rho_RNA_bind| HM:PFM:REP 8->48|PF07498|9.1e-19|56.1|41/43|Rho_N| GO:PFM:NREP 6 GO:PFM GO:0003715|"GO:transcription termination factor activity"|PF07498|IPR011112| GO:PFM GO:0006353|"GO:transcription termination"|PF07498|IPR011112| GO:PFM GO:0003715|"GO:transcription termination factor activity"|PF07497|IPR011113| GO:PFM GO:0003723|"GO:RNA binding"|PF07497|IPR011113| GO:PFM GO:0006353|"GO:transcription termination"|PF07497|IPR011113| GO:PFM GO:0005524|"GO:ATP binding"|PF00006|IPR000194| RP:SCP:NREP 4 RP:SCP:REP 6->45|1a62A1|9e-14|42.5|40/47|a.140.3.1| RP:SCP:REP 51->128|1a62A2|1e-22|78.2|78/78|b.40.4.5| RP:SCP:REP 104->369|1bmfD3|5e-59|22.8|259/276|c.37.1.11| RP:SCP:REP 348->407|1x2lA1|2e-13|16.7|60/87|a.35.1.7| HM:SCP:REP 4->50|1a62A1|1.3e-10|51.1|47/0|a.140.3.1|1/1|Rho termination factor, N-terminal domain| HM:SCP:REP 51->128|1a62A2|1.7e-35|76.9|78/78|b.40.4.5|1/1|Nucleic acid-binding proteins| HM:SCP:REP 92->375|1e79A3|5.6e-76|34.7|268/0|c.37.1.11|1/1|P-loop containing nucleoside triphosphate hydrolases| OP:NHOMO 1510 OP:NHOMOORG 784 OP:PATTERN -------------------------------------------------------------------- 1122211111111111111-111111111111111111112111211121121211111111212112221111111111111213221111111111111111111131222222222222222111111111112221111-12-------------------------------------11111111222222222222222222222212222222222222222222111111111111111111111----------11-----11--------------------------------------------------22222222222232322222111222111211211222222222222211323222221111224222222322322222222122-33333233332232223342222221222222333322211111111111212322222222211112111122111221111111122112221433354344423332555625233322211223223222112322223222421111111222122223122222233333222222232333331212222122222222222222222221112412222222224232423222322333321-1222212211132233242442222222-43223322224241221121113343344444444444444442122322352455555445454113111111222211523111111111111111111-1111112133232222422222333111111111222232222245222223333333411-111222222222222222222---------------------1----2122222222132 --------------------------------------------------------------------------------------------------------------------------------------------------------------2--------------------------1--------2---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 421 STR:RPRED 100.0 SQ:SECSTR EcTTccTTcEEEETTccEEEEEEEccccEEEEEcccGGccTTcEEEEcccccccTTcEEEEcccccccEEEEEEEEEccTTEEEEEEccccTTccTTcEEEcccEEEccGGGcTcEEcTcccccccccccccEEEcccccccGGGccccccEcccccEccccHHHHHHccEETTcEEEEEEcTTccHHHHHHHHHHHTTTTcccEEEEEEEEcccHHHHHHHHHcccEEEEEEcTTccHHHHHHHHHHHHHHHHHHHHTcccEEEEEEcTHHHHHHHHHHHGGGTccccGGGccTTHHHHHHHHHTTccccccccEEEEEEEEcGGGcTTcHHHHHHGGGcccEEEEccHHHHTTTccccccTTccEETTcHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHcGGGccHHHHHHHHHHHH DISOP:02AL 1-1,421-422| PSIPRED cccccHHHHHcccHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHcccEEEEccEEEEEEcccccccccccccccccccccccHHHHHHHccccccEEEccEEcccccccccccEEEccccccccccccccccccccccccccccccEEcccccccccHHHHHHHHHccccccEEEEEcccccccHHHHHHHHHHHHHHcccEEEEEEEEEccHHHHHHHHHHccccEEEEcccccHHHHHHHHHHHHHHHHHHHHccccEEEEEEcHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHccccccccEEEEEEEEEccccccccccHHHHHHcccEEEEEcHHHHHcccccccccccccccccHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHccc //