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Rhodopseudomonas palustris BisB5 (rpal2)
Gene : ABE37695.1
DDBJ      :             LysR, substrate-binding
Swiss-Prot:             

Homologs  Archaea  2/68 : Bacteria  638/915 : Eukaryota  6/199 : Viruses  0/175   --->[See Alignment]
a.4.5c.94.1
:312 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   1->289 3hhgG PDBj 3e-13 26.4 %
:RPS:PDB   1->236 1b9nB PDBj 2e-20 12.8 %
:RPS:SCOP  1->97 1b9mA1  a.4.5.8 * 8e-16 20.6 %
:RPS:SCOP  90->290 1i69A  c.94.1.1 * 2e-23 20.4 %
:HMM:SCOP  1->114 1b9mA1 a.4.5.8 * 4.3e-24 33.6 %
:HMM:SCOP  84->305 1uthA_ c.94.1.1 * 3.2e-35 26.0 %
:RPS:PFM   5->63 PF00126 * HTH_1 5e-05 39.0 %
:RPS:PFM   92->247 PF03466 * LysR_substrate 1e-09 29.5 %
:HMM:PFM   89->293 PF03466 * LysR_substrate 4.8e-37 30.9 204/209  
:HMM:PFM   7->64 PF00126 * HTH_1 2.6e-17 37.9 58/60  
:BLT:SWISS 1->268 YBHD_ECOLI 7e-23 24.3 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABE37695.1 GT:GENE ABE37695.1 GT:PRODUCT LysR, substrate-binding GT:DATABASE GIB00345CH01 GT:ORG rpal2 GB:ACCESSION GIB00345CH01 GB:LOCATION complement(524645..525583) GB:FROM 524645 GB:TO 525583 GB:DIRECTION - GB:PRODUCT LysR, substrate-binding GB:PROTEIN_ID ABE37695.1 GB:DB_XREF GI:91681393 InterPro:IPR000847 InterPro:IPR005119 LENGTH 312 SQ:AASEQ MRFDLIDLRLFVNIVQSGSITRGAEASHMALASASERVSGMESLLGTPLLRRERRGVAPTAAGRALLHHARSVTLQIERMRGDLRAFSAGMRGEVRMLSNTAGLVDLVPAALRRFLTAHPNVDVDLEERTSMEIVQAVAEGQAEFGVIAGTADPGALDIRTLIVDRLAVLAARTHPLAAREAVGFAELLDERFVGLGAGALHDHLQQHAAQLGRRIAYRVRLSSFEAVARLVEAGVGLAILPMSAIDRHPADDVTAIALTDAWSQRQLLVCAIDFGELTTHARLLVEELQRQAGKLDDHLGPSPVTAGPQSP GT:EXON 1|1-312:0| BL:SWS:NREP 1 BL:SWS:REP 1->268|YBHD_ECOLI|7e-23|24.3|268/317| BL:PDB:NREP 1 BL:PDB:REP 1->289|3hhgG|3e-13|26.4|276/294| RP:PDB:NREP 1 RP:PDB:REP 1->236|1b9nB|2e-20|12.8|226/245| RP:PFM:NREP 2 RP:PFM:REP 5->63|PF00126|5e-05|39.0|59/60|HTH_1| RP:PFM:REP 92->247|PF03466|1e-09|29.5|156/207|LysR_substrate| HM:PFM:NREP 2 HM:PFM:REP 89->293|PF03466|4.8e-37|30.9|204/209|LysR_substrate| HM:PFM:REP 7->64|PF00126|2.6e-17|37.9|58/60|HTH_1| GO:PFM:NREP 2 GO:PFM GO:0003700|"GO:transcription factor activity"|PF00126|IPR000847| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF00126|IPR000847| RP:SCP:NREP 2 RP:SCP:REP 1->97|1b9mA1|8e-16|20.6|97/122|a.4.5.8| RP:SCP:REP 90->290|1i69A|2e-23|20.4|196/206|c.94.1.1| HM:SCP:REP 1->114|1b9mA1|4.3e-24|33.6|107/0|a.4.5.8|1/1|"Winged helix" DNA-binding domain| HM:SCP:REP 84->305|1uthA_|3.2e-35|26.0|215/0|c.94.1.1|1/1|Periplasmic binding protein-like II| OP:NHOMO 5537 OP:NHOMOORG 646 OP:PATTERN -------------------------------------1---------------1-------------- 3561C2-255621-743----3--1E------34547GNM-5167122211-5832-4--331-75OCHC5-11111211234--1--1111-2------12--11-212--------------------------45534---214226335233311111133277562111111111111331-----63B8888899847879B85299CD9792336--1355444LT-11111111111111322221-21131--1-331122--1--1------------------------------------------------3263222222212--2223111121--6-111BD3421-1322111---1116443-1--182IGH4487867555655566559-CAGABTDMAG51XJJJBFBVRFHHRJ34268K878B2BGA9AAAAAA89A44545------------------------------18I32HqdSfott*wvOIJJIhhyrPOPOEM*cvm*wn-3SOF9DJGEnFU7jM6D57422F6112221211257A32213221226333-31353414233346512------------------------177945396916459566524AB776A684799--12239------DBDF8EACDC8C887DA-D9BCD77CBBD8D9ABBA7LTJ9E244BA98AABAA8B9B98BG88588781-534344334444---4-----1211259FM443222111-1---1CC9AC59234M5SQRSQfQdCZXZS8JKO1----1---345778887856677ACEHFHG7982111--1211------------1-------------------------------------381 -------------1------------------------------------------------------------------------------------------------------------------------------------------------8----1-----------1------------A-----3---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 296 STR:RPRED 94.9 SQ:SECSTR EEEcHHHHHHHHHHHHHccHHHHHHHHTccHHHHHHHHHHHHHHHTcccccccccHEEEcHHHHHHHHHHHHHHHHHHHHHHHHHcTTccccccHHHHHHHHHTTTccccccEEEEEEEcccEEEEEETTcccEEEEEccHHHHHHHTccTTcEEEEEEcEEEccHHHHTTccEEEEEEEEEEEEcccEEEEEEEcTTccEEEEEEEGGGcTTccTTcTcEEEEEEcGGGcEEEcccEEEEEGGGccTTTcTTcEEEEccTTcccEEEEEEEETTccccHHHHHHHHHHcTTccHH################ DISOP:02AL 86-89,295-313| PSIPRED ccccHHHHHHHHHHHHHccHHHHHHHHcccccHHHHHHHHHHHHHccEEEEEccccEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEEEcHHHHHHHHHHHHHHHHHccccEEEEEEccHHHHHHHHHccccEEEEEccccccccEEEEEEEEccEEEEEcccccccccccccHHHHccccEEEccccHHHHHHHHHHHHccccccEEEEEccHHHHHHHHHccccEEEcHHHHHHHcccccEEEEEccccccEEEEEEEEcccccccHHHHHHHHHHHHHccHHHHHccccccccccccc //