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Rhodopseudomonas palustris BisB5 (rpal2)
Gene : ABE37771.1
DDBJ      :             2',5' RNA ligase
Swiss-Prot:             

Homologs  Archaea  5/68 : Bacteria  105/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
d.61.1
:178 amino acids
:SECSTR
:PSIPRED
:BLT:PDB   29->129 1vdxA PDBj 3e-06 30.0 %
:RPS:PDB   3->176 2d4gA PDBj 4e-22 17.3 %
:RPS:SCOP  3->176 1iuhA  d.61.1.2 * 2e-24 24.0 %
:HMM:SCOP  2->176 1iuhA_ d.61.1.2 * 3.5e-41 39.9 %
:RPS:PFM   9->85 PF02834 * 2_5_RNA_ligase 1e-06 36.4 %
:HMM:PFM   8->83 PF02834 * 2_5_RNA_ligase 7e-18 31.6 76/87  
:HMM:PFM   92->167 PF02834 * 2_5_RNA_ligase 1.5e-18 36.5 74/87  
:BLT:SWISS 5->125 YMA3_BACST 2e-10 29.8 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABE37771.1 GT:GENE ABE37771.1 GT:PRODUCT 2',5' RNA ligase GT:DATABASE GIB00345CH01 GT:ORG rpal2 GB:ACCESSION GIB00345CH01 GB:LOCATION 605725..606261 GB:FROM 605725 GB:TO 606261 GB:DIRECTION + GB:PRODUCT 2',5' RNA ligase GB:PROTEIN_ID ABE37771.1 GB:DB_XREF GI:91681469 InterPro:IPR004175 LENGTH 178 SQ:AASEQ MPRLFTGLEIPAEVTSTLSNLRGGLPGARWIEPENYHLTLRFIGDIDGVTANEIASTLFRINRKPFEVALQGLSSFGGRKPRAVVASVVPSKPLIELQAELERLLQRVGLDPEGRKFTPHVTLARLRDVSCQDVADYLSIRGYFPTKVFKAERFVLFSSRASTGGGPYVVEAPYELTP GT:EXON 1|1-178:0| BL:SWS:NREP 1 BL:SWS:REP 5->125|YMA3_BACST|2e-10|29.8|121/314| SEG 94->107|lielqaelerllqr| BL:PDB:NREP 1 BL:PDB:REP 29->129|1vdxA|3e-06|30.0|100/184| RP:PDB:NREP 1 RP:PDB:REP 3->176|2d4gA|4e-22|17.3|162/165| RP:PFM:NREP 1 RP:PFM:REP 9->85|PF02834|1e-06|36.4|77/86|2_5_RNA_ligase| HM:PFM:NREP 2 HM:PFM:REP 8->83|PF02834|7e-18|31.6|76/87|2_5_RNA_ligase| HM:PFM:REP 92->167|PF02834|1.5e-18|36.5|74/87|2_5_RNA_ligase| RP:SCP:NREP 1 RP:SCP:REP 3->176|1iuhA|2e-24|24.0|167/183|d.61.1.2| HM:SCP:REP 2->176|1iuhA_|3.5e-41|39.9|168/183|d.61.1.2|1/1|LigT-like| OP:NHOMO 110 OP:NHOMOORG 110 OP:PATTERN --1-----------------------------------------1-111------------------- 111-------------------------------------------------------------------------------1-------------------------1--------------------------------------------------------------------------------1------------1---------------1---1-------------------------------------------------------------------------------------------------------------------------------------11----1-------------1111-1111111111111111111111111111-11111111111-11111111111111111---1111-----------11111111--------------------------------11-------------------------------1-1-----------------------------------------------1-----1111111-1----1----------------------------------1-----------------------------------------------------------------------------------------------------------------------------111-----------------------------------------------------------------------------------------------------11-----------------------------------------------1- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 167 STR:RPRED 93.8 SQ:SECSTR ##EEEEEccccHHHHHHHHHHHHHH##cGGGGTccccccccccEEccGGGHHHHHHHHHHHHHccEEEEEEEEEcTTccTcccEEEEEcccHHHHHHHHHHHHTTcGGGccccccccccEEEEEccccH##HHHHHHHHHHTccccEEEEEcEEEEEEEc###TTccEEEEEEEEc## PSIPRED ccEEEEEccccHHHHHHHHHHHHHccccEEccHHHEEEEEEEcccccHHHHHHHHHHHHHHcccccEEEEEEEEEccccccEEEEEEEcccHHHHHHHHHHHHHHHHccccHHHccccccEEEEEEccccHHHHHHHHHHHcccccccEEEEEEEEEEEEEcccccEEEEEEEEEccc //