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Rhodopseudomonas palustris BisB5 (rpal2)
Gene : ABE37821.1
DDBJ      :             regulatory protein, TetR
Swiss-Prot:             

Homologs  Archaea  9/68 : Bacteria  33/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
a.121.1a.4.1
:197 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   13->95 2f07B PDBj 6e-09 39.2 %
:RPS:PDB   12->161 3br6A PDBj 7e-17 15.3 %
:RPS:SCOP  12->79 1z77A1  a.4.1.9 * 1e-11 23.5 %
:RPS:SCOP  85->197 1vi0A2  a.121.1.1 * 1e-04 15.0 %
:HMM:SCOP  7->85 2fbqA1 a.4.1.9 * 2.2e-14 27.8 %
:HMM:SCOP  82->198 1vi0A2 a.121.1.1 * 0.00032 17.1 %
:RPS:PFM   18->61 PF00440 * TetR_N 6e-04 40.9 %
:HMM:PFM   17->61 PF00440 * TetR_N 1.3e-14 33.3 45/47  
:BLT:SWISS 12->107 YDGC_BACSU 4e-10 35.4 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABE37821.1 GT:GENE ABE37821.1 GT:PRODUCT regulatory protein, TetR GT:DATABASE GIB00345CH01 GT:ORG rpal2 GB:ACCESSION GIB00345CH01 GB:LOCATION 656829..657422 GB:FROM 656829 GB:TO 657422 GB:DIRECTION + GB:PRODUCT regulatory protein, TetR GB:PROTEIN_ID ABE37821.1 GB:DB_XREF GI:91681519 InterPro:IPR001647 LENGTH 197 SQ:AASEQ MGKRAENSAAIKERLYVAAAEIVAQVGFAGASVARITDKAGIAQGTFYNYFETREAIFEELVPIFGKKLRGHIRSRVGDTFDFYERERIAFDAFFEFLHGNRFFARVLNEAEIFTPAPHHDYFESILKGYRAELARASREGQIRKLSASEVEVISLMLMSARTYFALHYSKQIHESRKVSSTVTNTYMDVVRRALSP GT:EXON 1|1-197:0| BL:SWS:NREP 1 BL:SWS:REP 12->107|YDGC_BACSU|4e-10|35.4|96/195| BL:PDB:NREP 1 BL:PDB:REP 13->95|2f07B|6e-09|39.2|79/196| RP:PDB:NREP 1 RP:PDB:REP 12->161|3br6A|7e-17|15.3|150/185| RP:PFM:NREP 1 RP:PFM:REP 18->61|PF00440|6e-04|40.9|44/47|TetR_N| HM:PFM:NREP 1 HM:PFM:REP 17->61|PF00440|1.3e-14|33.3|45/47|TetR_N| GO:PFM:NREP 2 GO:PFM GO:0003700|"GO:transcription factor activity"|PF00440|IPR001647| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF00440|IPR001647| RP:SCP:NREP 2 RP:SCP:REP 12->79|1z77A1|1e-11|23.5|68/75|a.4.1.9| RP:SCP:REP 85->197|1vi0A2|1e-04|15.0|113/117|a.121.1.1| HM:SCP:REP 7->85|2fbqA1|2.2e-14|27.8|79/0|a.4.1.9|1/1|Homeodomain-like| HM:SCP:REP 82->198|1vi0A2|0.00032|17.1|117/0|a.121.1.1|1/1|Tetracyclin repressor-like, C-terminal domain| OP:NHOMO 43 OP:NHOMOORG 42 OP:PATTERN -------111111111---------------------------------------------------- --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------11111--1-1-1----------1----1---------1-----------------------------------------------------------------------------------------------------------------------1------------------1-----111--------1-------2-----------------------------------------11------------------------1-------------------------------11-1------------------------------111-------------------------------------------------------------------1--1-------------------------------------------------------------11----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1---1------ ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 197 STR:RPRED 100.0 SQ:SECSTR cccccccGcHcHHHHHHHHHHHHHHHcTTTccHHHHHHHTTccHHHHHHHTccHHHHHHHHHHHHHHHHHHHHHHHGGGcccHHHHHHHHHHHHHHHHTTccHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccccHHHHHHcHHHHHHHHHHHHHHHHHcccc DISOP:02AL 1-13| PSIPRED ccccHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHcccHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcccc //