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Rhodopseudomonas palustris BisB5 (rpal2)
Gene : ABE37843.1
DDBJ      :             regulatory proteins, IclR
Swiss-Prot:             

Homologs  Archaea  5/68 : Bacteria  333/915 : Eukaryota  1/199 : Viruses  0/175   --->[See Alignment]
a.4.5d.110.2
:243 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   11->204 1mkmB PDBj 6e-15 23.3 %
:RPS:PDB   1->67 3dp7B PDBj 2e-06 18.2 %
:RPS:PDB   80->239 3d3oB PDBj 3e-22 18.8 %
:RPS:SCOP  3->76 1mkmA1  a.4.5.33 * 2e-09 19.2 %
:RPS:SCOP  80->235 1td5A  d.110.2.2 * 2e-25 27.6 %
:HMM:SCOP  3->77 1mkmA1 a.4.5.33 * 9e-13 31.1 %
:HMM:SCOP  79->240 1mkmA2 d.110.2.2 * 2.3e-31 34.0 %
:RPS:PFM   10->50 PF09339 * HTH_IclR 7e-04 43.9 %
:RPS:PFM   127->222 PF01614 * IclR 2e-08 34.4 %
:HMM:PFM   121->221 PF01614 * IclR 1.3e-16 27.7 101/129  
:HMM:PFM   7->53 PF09339 * HTH_IclR 1.2e-15 34.0 47/52  
:BLT:SWISS 3->231 ICLR_SALTY 5e-18 26.6 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABE37843.1 GT:GENE ABE37843.1 GT:PRODUCT regulatory proteins, IclR GT:DATABASE GIB00345CH01 GT:ORG rpal2 GB:ACCESSION GIB00345CH01 GB:LOCATION complement(685502..686233) GB:FROM 685502 GB:TO 686233 GB:DIRECTION - GB:PRODUCT regulatory proteins, IclR GB:PROTEIN_ID ABE37843.1 GB:DB_XREF GI:91681541 InterPro:IPR005471 LENGTH 243 SQ:AASEQ MIVRQAANVLEILEYFARVKKPATLAEIADHFGWPRSSTFNLLTTLADKGYLYEPRPRAGYYPTPRWLVLAREVSEVEPLPAWSRALITSLSSETGETVAIAAPAGVMAVFIDVIESSAAIRYFAHIGHRVPIHATSSGRALLLQYSQDERDSLYRKIEFKQYNPSTPISIDAVEAELSKSIERGYCQSFADYSRDLAGVAVPLPIGERRLSVVVAGPEFRIGDRTAEIAATLKQFVERFRGK GT:EXON 1|1-243:0| BL:SWS:NREP 1 BL:SWS:REP 3->231|ICLR_SALTY|5e-18|26.6|229/274| BL:PDB:NREP 1 BL:PDB:REP 11->204|1mkmB|6e-15|23.3|193/247| RP:PDB:NREP 2 RP:PDB:REP 1->67|3dp7B|2e-06|18.2|66/350| RP:PDB:REP 80->239|3d3oB|3e-22|18.8|154/163| RP:PFM:NREP 2 RP:PFM:REP 10->50|PF09339|7e-04|43.9|41/52|HTH_IclR| RP:PFM:REP 127->222|PF01614|2e-08|34.4|96/127|IclR| HM:PFM:NREP 2 HM:PFM:REP 121->221|PF01614|1.3e-16|27.7|101/129|IclR| HM:PFM:REP 7->53|PF09339|1.2e-15|34.0|47/52|HTH_IclR| GO:PFM:NREP 2 GO:PFM GO:0003677|"GO:DNA binding"|PF09339|IPR005471| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF09339|IPR005471| RP:SCP:NREP 2 RP:SCP:REP 3->76|1mkmA1|2e-09|19.2|73/75|a.4.5.33| RP:SCP:REP 80->235|1td5A|2e-25|27.6|156/179|d.110.2.2| HM:SCP:REP 3->77|1mkmA1|9e-13|31.1|74/0|a.4.5.33|1/1|"Winged helix" DNA-binding domain| HM:SCP:REP 79->240|1mkmA2|2.3e-31|34.0|162/0|d.110.2.2|1/1|GAF domain-like| OP:NHOMO 890 OP:NHOMOORG 339 OP:PATTERN ------------------------6--21-12------------------------------------ --312--1223---11-----3---8-----12121--DC11-1252----27562------1142C6541----111----2----1------------------------------------------------11111----2-------------------------------------2111311-21-11111221111121243221111113321--------22------------------------------------1-----------------------------------------------------12--2-----------1--1----------------11-1-23-1-2------211------1-3-1--6511111111111-1-1-11---112231-433--1422162611--3441112332--------2--------------------------------------56--1B9693557641333277A8333312B1GBEG8--211112--413185-------11----------1-----------------142153411-------------------------------------1--11-2-------------------------1--------223223-4333433333-33333333233333333354452212-323332333333333333233332--211221122222----------------32---1-1---------4442414121112111-222211-11111-----------------------------------------------------------------------------------------11111--- --------------------------------------------------------------------------------------------------------------------------------------------------------------1---------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 239 STR:RPRED 98.4 SQ:SECSTR HHHcHHHHHHHHHHHHTTHTccccHHHHHHHHTccHHHHHHHHHHHHHTTcEEEEEEEEETTEEEEEEEEcccEEEEcTHHHHHHHHHHHHHHHHccEEEEEEEETTEEEEEEEEcccccccccccccccEEGGcHHHHHTTcHHHHHHHHHHHHHHcccccHHGGGTcccccHHHHHHHHHHHcEEEEEccccTTEEEEEEEccccTTccEEEEEEEHHHHHHTHHHHHHHHHHHHHH#### DISOP:02AL 1-1,241-244| PSIPRED cHHHHHHHHHHHHHHHHcccccccHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccccccEEEHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccEEEEEEEccEEEEEEEEEccccEEEEEccccEEcccccHHHHHHHHHccHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHccEEEccccccccEEEEEEEccccEEEEEEEEEEHHHccHHHHHHHHHHHHHHHHHHcc //