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Rhodopseudomonas palustris BisB5 (rpal2)
Gene : ABE37998.1
DDBJ      :             Integrase, catalytic region
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  482/915 : Eukaryota  2/199 : Viruses  3/175   --->[See Alignment]
c.55.3
:244 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:RPS:PDB   73->214 1cxuA PDBj 3e-14 21.9 %
:RPS:SCOP  73->230 1b92A  c.55.3.2 * 2e-12 19.0 %
:HMM:SCOP  65->236 1c0mA2 c.55.3.2 * 4e-33 29.6 %
:RPS:PFM   72->185 PF00665 * rve 2e-05 30.3 %
:HMM:PFM   70->187 PF00665 * rve 2.9e-25 31.9 116/120  
:HMM:PFM   16->40 PF01316 * Arg_repressor 0.00026 36.0 25/70  
:BLT:SWISS 1->244 T629_SHISO 7e-86 65.3 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABE37998.1 GT:GENE ABE37998.1 GT:PRODUCT Integrase, catalytic region GT:DATABASE GIB00345CH01 GT:ORG rpal2 GB:ACCESSION GIB00345CH01 GB:LOCATION complement(851365..852099) GB:FROM 851365 GB:TO 852099 GB:DIRECTION - GB:PRODUCT Integrase, catalytic region GB:PROTEIN_ID ABE37998.1 GB:DB_XREF GI:91681696 InterPro:IPR001584 LENGTH 244 SQ:AASEQ MFEENFAVYGVRKVWRQLKREGFHVARCTVARLMRQMGLQGVIRGKSIKTTISDKAAPCPLDHVNRQFKAPRPNVLWLSDFTYVATWTGFVYVAFVIDAYARRIVGRRASRTAHAGFVFDALEQALHDRRPVHRGGLVHHSDRGSQYVSIKYTERLAEAGIEPSVGSVGDSYDNALAETINGLYKAEVIHRRGPWRSFEAVEFATLEWVDWFNNRRLLEPIGNIPPAEAEQRYYAMLERPAMAA GT:EXON 1|1-244:0| BL:SWS:NREP 1 BL:SWS:REP 1->244|T629_SHISO|7e-86|65.3|239/296| RP:PDB:NREP 1 RP:PDB:REP 73->214|1cxuA|3e-14|21.9|137/143| RP:PFM:NREP 1 RP:PFM:REP 72->185|PF00665|2e-05|30.3|109/116|rve| HM:PFM:NREP 2 HM:PFM:REP 70->187|PF00665|2.9e-25|31.9|116/120|rve| HM:PFM:REP 16->40|PF01316|0.00026|36.0|25/70|Arg_repressor| GO:PFM:NREP 2 GO:PFM GO:0003677|"GO:DNA binding"|PF00665|IPR001584| GO:PFM GO:0015074|"GO:DNA integration"|PF00665|IPR001584| RP:SCP:NREP 1 RP:SCP:REP 73->230|1b92A|2e-12|19.0|137/144|c.55.3.2| HM:SCP:REP 65->236|1c0mA2|4e-33|29.6|162/0|c.55.3.2|1/1|Ribonuclease H-like| OP:NHOMO 3833 OP:NHOMOORG 487 OP:PATTERN -------------------------------------------------------------------- 1-HI-QBN444O-E2H111-1K--58G4HIE-EHGH-8EG--163--4---1-1--4*---26---C212-4---91----1-----1--F---B-1----3-61475--------------------6231-4-1------4---91----------------1-3----------------5--1----173----352438C576B-5992-641-33214-2--2-26111116-----1-1---1--2-5--A7-G-6---117-231941OjO561C8i9-8412-4354343232312434245252--569-----17-41121111-8-R-11---12-I-1--2-2A421343--112---5-42BE----------D3312--12-123443324232-5-1----8111--445---2--12-4-1-512-21B3-1DDDDDDDD357C1A---------------------1-------------------X4--F956----FF551-322--9F-21H-289967D3622C--57131111-22------DO36-4-1311--B1--------25-B13-----34-----------------------D----2-J337-83--31gGOB8C-98B31nLA736----27--------1122226OTG62D76D-P975B581*DR5BBB5CB3514--71-35---2--38D-3--F6*e*****--EBAA5CAAA15---2------5--1421-F374-15--11-1-----51--5DAJ6832D11-41-341-5A9E---------42--965645P1915D3M9H7988D------9-----A4----------1343--------------C--------1-8--------- -----------------------------------------------------------------------------------------------------------------------------------------------3--------------------------------------------2---------- ------------------------------------------------------------1-----------------------------------------------------------------------------------------1-----1------------------ STR:NPRED 177 STR:RPRED 72.5 SQ:SECSTR ###########################################################cccTTTcccccccTTcEEEEEEEEcGGGTTccEEEEEEETTTccEEEEEEccccHHHHHHHHHHHHHHHccccEccccEEEEEccHHHHcHHHHHHHHHHTcEEEEEcTTcHHHHHHHHHHHHHHHHHHHHHHHHTTcccccHHHHHHHHHHHHcHccGGGcccccHHHHHHHHHEE######## DISOP:02AL 239-245| PSIPRED ccccccccccHHHHHHHHHHccccccHHHHHHHHHHHccEEEEEcccccccccccccccccccccccccccccccEEEccEEEEEcccccEEEEEEEEccccEEEEEEEcccccHHHHHHHHHHHHHHccccccccEEEccccccccHHHHHHHHHHHccccccccccccHHHccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcccccHHHcccccHHHHHHHHHHHcccccccc //