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Rhodopseudomonas palustris BisB5 (rpal2)
Gene : ABE38052.1
DDBJ      :             Cytochrome-c oxidase
Swiss-Prot:             

Homologs  Archaea  13/68 : Bacteria  414/915 : Eukaryota  64/199 : Viruses  0/175   --->[See Alignment]
b.6.1f.17.2
:284 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   33->265 1m56B PDBj 9e-50 41.2 %
:RPS:PDB   33->271 3dtuB PDBj 8e-55 52.3 %
:RPS:SCOP  33->129 1ar1B2  f.17.2.1 * 6e-16 27.8 %
:RPS:SCOP  130->267 1ar1B1  b.6.1.2 * 1e-39 52.2 %
:HMM:SCOP  23->129 1ar1B2 f.17.2.1 * 3.7e-27 30.8 %
:HMM:SCOP  129->273 1m56B1 b.6.1.2 * 7e-57 52.4 %
:RPS:PFM   38->61 PF02790 * COX2_TM 2e-04 45.8 %
:RPS:PFM   133->253 PF00116 * COX2 4e-39 58.5 %
:HMM:PFM   133->254 PF00116 * COX2 2e-46 58.0 119/120  
:HMM:PFM   35->121 PF02790 * COX2_TM 1.1e-25 32.9 82/84  
:HMM:PFM   105->158 PF10526 * NADH_ub_rd_NUML 5.4e-05 20.4 54/80  
:HMM:PFM   256->275 PF01017 * STAT_alpha 0.00067 45.0 20/182  
:BLT:SWISS 34->279 COX2_RICBR 6e-57 48.6 %
:PROS 199->247|PS00078|COX2
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABE38052.1 GT:GENE ABE38052.1 GT:PRODUCT Cytochrome-c oxidase GT:DATABASE GIB00345CH01 GT:ORG rpal2 GB:ACCESSION GIB00345CH01 GB:LOCATION 918743..919597 GB:FROM 918743 GB:TO 919597 GB:DIRECTION + GB:PRODUCT Cytochrome-c oxidase GB:PROTEIN_ID ABE38052.1 GB:DB_XREF GI:91681750 InterPro:IPR001505 InterPro:IPR002429 InterPro:IPR011759 LENGTH 284 SQ:AASEQ MTMSMGLFGRRLLSLAILGGALGFSGAAVAAEGQPSPWEMKLQQAATPVMENIVWFHDFLLWLIIAITLFVLALLVIVAVKFNAKANPIPSKTTHHTLIEVAWTIVPVLILVAVAVPSFRLLFLQLDIPKPDVTIKATGNQWNWTYNYPDDKIEFTSIMLTDEERAKMNPVPPRLLAVDNETVVPVNKVVRIQTTAADVIHSWAIPSFGVKIDAIPGRLNETWFKATREGRYYGQCSELCGKDHAFMPIVVRVVSDQEYDAWKKQQQIASHGGKSYASAGAPAR GT:EXON 1|1-284:0| BL:SWS:NREP 1 BL:SWS:REP 34->279|COX2_RICBR|6e-57|48.6|243/269| PROS 199->247|PS00078|COX2|PDOC00075| TM:NTM 3 TM:REGION 12->30| TM:REGION 59->81| TM:REGION 101->123| SEG 9->31|grrllslailggalgfsgaavaa| SEG 63->80|liiaitlfvlallvivav| SEG 105->117|ivpvlilvavavp| BL:PDB:NREP 1 BL:PDB:REP 33->265|1m56B|9e-50|41.2|233/260| RP:PDB:NREP 1 RP:PDB:REP 33->271|3dtuB|8e-55|52.3|239/259| RP:PFM:NREP 2 RP:PFM:REP 38->61|PF02790|2e-04|45.8|24/82|COX2_TM| RP:PFM:REP 133->253|PF00116|4e-39|58.5|118/119|COX2| HM:PFM:NREP 4 HM:PFM:REP 133->254|PF00116|2e-46|58.0|119/120|COX2| HM:PFM:REP 35->121|PF02790|1.1e-25|32.9|82/84|COX2_TM| HM:PFM:REP 105->158|PF10526|5.4e-05|20.4|54/80|NADH_ub_rd_NUML| HM:PFM:REP 256->275|PF01017|0.00067|45.0|20/182|STAT_alpha| GO:PFM:NREP 8 GO:PFM GO:0004129|"GO:cytochrome-c oxidase activity"|PF02790|IPR011759| GO:PFM GO:0005507|"GO:copper ion binding"|PF02790|IPR011759| GO:PFM GO:0009055|"GO:electron carrier activity"|PF02790|IPR011759| GO:PFM GO:0016021|"GO:integral to membrane"|PF02790|IPR011759| GO:PFM GO:0022900|"GO:electron transport chain"|PF02790|IPR011759| GO:PFM GO:0004129|"GO:cytochrome-c oxidase activity"|PF00116|IPR002429| GO:PFM GO:0005507|"GO:copper ion binding"|PF00116|IPR002429| GO:PFM GO:0016020|"GO:membrane"|PF00116|IPR002429| RP:SCP:NREP 2 RP:SCP:REP 33->129|1ar1B2|6e-16|27.8|97/107|f.17.2.1| RP:SCP:REP 130->267|1ar1B1|1e-39|52.2|138/145|b.6.1.2| HM:SCP:REP 23->129|1ar1B2|3.7e-27|30.8|107/107|f.17.2.1|1/1|Cytochrome c oxidase subunit II-like, transmembrane region| HM:SCP:REP 129->273|1m56B1|7e-57|52.4|145/0|b.6.1.2|1/1|Cupredoxins| OP:NHOMO 654 OP:NHOMOORG 491 OP:PATTERN 11----------------1-1---311111-------------------------------1----11 1241111----1--1--11-1-1111111111----1-111111111111111111111111111111111------------1---------------------11111--------------------------11111---111222111111111111-22125332111111111111---11---11-222222221222222212211221111-111------111---------------------------------------------------------------------------------------------------------------------1---------------------1-11112-----12211331121221111111-111122432423331-211133224443111112112223111--------111-112-111111111111111111111111-111111111--111232222321111222322222122423221122321111112141211121111-------1133211-----11---111-1-1-1111-222222---------------------------11---211111111111111111111111111---31-1--------------------------------------------------------------------------------------------1-----11111111--------------------------2111111111211112----------------2-----111111111111111----11--111111----------------------------------------------12- 11------1-----1--1---------111-11111-------111-1------121-1---1-111---1-----1----------------1---11-1--111------11111-----1-11-1-16--11-----1--11--------1-1-------2--12--1-12-111-------1--1--1------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 239 STR:RPRED 84.2 SQ:SECSTR ################################EcccTTcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcTTTccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEEEETTEEEEEETTTTEEEEEccTTcGGGTcccccGGGTTcccccEEEETTcEEEEEEEEccccEEEEEGGGTEEEEEccTccEEEEEEccccEEEEEcccccccTTGGGccEEEEEEcHHHHHHHHHHTccccc############# DISOP:02AL 1-3,5-5,266-285| PSIPRED cccHHHHHHHHHHHHHHHHHHccccccHHccccccccccccccccccHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEccccEEEEEcccccccEEEEcccHHHHHHccccccEEEEccccEEEcccccEEEEEEcHHHHHHHHHHHcccccccccccHHHHHHHHcccccccccHHHHHccccccccEEEEEEcHHHHHHHHHHHHHHccccccccccccccc //