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Rhodopseudomonas palustris BisB5 (rpal2)
Gene : ABE38115.1
DDBJ      :             transcriptional regulator, XRE family with shikimate kinase activity
Swiss-Prot:             

Homologs  Archaea  5/68 : Bacteria  651/915 : Eukaryota  62/199 : Viruses  0/175   --->[See Alignment]
a.35.1c.37.1
:317 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   24->78 1y7yB PDBj 6e-08 38.2 %
:BLT:PDB   136->284 1kagA PDBj 5e-17 34.8 %
:RPS:PDB   26->95 2axuC PDBj 5e-15 19.1 %
:RPS:PDB   136->299 2ax4B PDBj 8e-11 16.9 %
:RPS:SCOP  26->104 2icpA1  a.35.1.3 * 9e-12 11.4 %
:RPS:SCOP  136->299 1knqA  c.37.1.17 * 1e-10 11.3 %
:HMM:SCOP  25->97 1y9qA1 a.35.1.8 * 3.9e-13 32.9 %
:HMM:SCOP  100->165 1gvnB_ c.37.1.21 * 2e-07 28.6 %
:HMM:SCOP  134->300 1kagA_ c.37.1.2 * 1.3e-27 26.5 %
:RPS:PFM   31->85 PF01381 * HTH_3 2e-04 34.5 %
:RPS:PFM   143->287 PF01202 * SKI 3e-19 43.9 %
:HMM:PFM   142->297 PF01202 * SKI 1.9e-41 34.4 154/158  
:HMM:PFM   32->85 PF01381 * HTH_3 1.1e-13 33.3 54/55  
:BLT:SWISS 27->86 YSMA_SERMA 6e-05 33.3 %
:BLT:SWISS 138->290 AROK_RHOBA 5e-23 39.5 %
:PROS 189->215|PS01128|SHIKIMATE_KINASE
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABE38115.1 GT:GENE ABE38115.1 GT:PRODUCT transcriptional regulator, XRE family with shikimate kinase activity GT:DATABASE GIB00345CH01 GT:ORG rpal2 GB:ACCESSION GIB00345CH01 GB:LOCATION complement(987359..988312) GB:FROM 987359 GB:TO 988312 GB:DIRECTION - GB:PRODUCT transcriptional regulator, XRE family with shikimate kinase activity GB:PROTEIN_ID ABE38115.1 GB:DB_XREF GI:91681813 InterPro:IPR000623 InterPro:IPR001387 LENGTH 317 SQ:AASEQ MIPHDIMSALLEMTESAESDAGFLLELGQRVRTLRGLRGMSRKVLAKVSGISERYIAQLESGKGNVSIILLRRVSDALATPLEDLLPNSDPSIDWPVIRDLVRRATPVQIAHAKDVLSGMGRLGAGARRAQALHGIALIGLRGAGKSTLGRMLADKIGWSFVELNKEIEQQNGLSVAEIIALYGQEGFRRMEQAALTQLLARKELMVLATGGGIVSEAISFDQILSSFYTIWLKADPEEHMARVRGQGDLRPMADDRAAMQELRTILQSREPLYARASGVLDTAGLSVDEAAAKLTAMVSPVLCRDACAFGLKNAAV GT:EXON 1|1-317:0| BL:SWS:NREP 2 BL:SWS:REP 27->86|YSMA_SERMA|6e-05|33.3|60/84| BL:SWS:REP 138->290|AROK_RHOBA|5e-23|39.5|152/187| PROS 189->215|PS01128|SHIKIMATE_KINASE|PDOC00868| SEG 117->133|lsgmgrlgagarraqal| BL:PDB:NREP 2 BL:PDB:REP 24->78|1y7yB|6e-08|38.2|55/66| BL:PDB:REP 136->284|1kagA|5e-17|34.8|141/158| RP:PDB:NREP 2 RP:PDB:REP 26->95|2axuC|5e-15|19.1|68/295| RP:PDB:REP 136->299|2ax4B|8e-11|16.9|160/195| RP:PFM:NREP 2 RP:PFM:REP 31->85|PF01381|2e-04|34.5|55/55|HTH_3| RP:PFM:REP 143->287|PF01202|3e-19|43.9|139/156|SKI| HM:PFM:NREP 2 HM:PFM:REP 142->297|PF01202|1.9e-41|34.4|154/158|SKI| HM:PFM:REP 32->85|PF01381|1.1e-13|33.3|54/55|HTH_3| GO:PFM:NREP 3 GO:PFM GO:0043565|"GO:sequence-specific DNA binding"|PF01381|IPR001387| GO:PFM GO:0004765|"GO:shikimate kinase activity"|PF01202|IPR000623| GO:PFM GO:0005524|"GO:ATP binding"|PF01202|IPR000623| RP:SCP:NREP 2 RP:SCP:REP 26->104|2icpA1|9e-12|11.4|79/87|a.35.1.3| RP:SCP:REP 136->299|1knqA|1e-10|11.3|159/171|c.37.1.17| HM:SCP:REP 25->97|1y9qA1|3.9e-13|32.9|73/0|a.35.1.8|1/1|lambda repressor-like DNA-binding domains| HM:SCP:REP 100->165|1gvnB_|2e-07|28.6|63/0|c.37.1.21|1/1|P-loop containing nucleoside triphosphate hydrolases| HM:SCP:REP 134->300|1kagA_|1.3e-27|26.5|166/0|c.37.1.2|1/1|P-loop containing nucleoside triphosphate hydrolases| OP:NHOMO 867 OP:NHOMOORG 718 OP:PATTERN -------------------------------------------11-22---1---------------- 1111---1------11111-1111111111111----11121--1----11-1-1-11-----1-1-11--1111111122111-111111111----111--11111-1--------------111111111111---11--11111111111111111111111111111111111111111--1111-1-1111111--1---11-111111--1111111-111111111--------------111111------1---11----1--111111-------11111111111111-----------------------1111----1-1-11-2----11121--11121-11121111111111-11111111111111113241112222211111111111-22222222131-11111111111111111-2111111121111111111111211-----------------------------111111111121111111111111221111111143233111--2111112222211-111111111111111122--21111--21211--212111121-----111-----------111111111-11--111111111111111111111111111111111-111-111111121221122222222222-22222222222222222212222222212222222222222222222222221222222222222111111111111111-1111111111111-1111111111111111111111111111-1111111111111111111111111111111111111111111------------------1---------------------------1--1----11- ------------11-111-----111111-11111111111-1-1---111111111-1---11-1--------1-1------1--1---3-1----------11----------------------------------------------------------2------------1-1-111111324-4111----1 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 282 STR:RPRED 89.0 SQ:SECSTR ######HHHHHHHHTTccTHHHHcccHHHHHHHHHHHTTccHHHHHTTTTTcHHHHHHHTTTcccccHHHHHHHHHHHTccHHHHHHHHTccccHHHHHHHHHHHHHHHcccHHHH#################cEEEEEccTTccHHHHHHHHHHHHHTTTEEEEcHHHHTTTTTTTccccHHHHHHHHHHHHHHHHHHHHTTcEEEEccccccHHHHHHHHHHHHTEEEEEEEccHHHHHHHcTTcccccHHHHHHTTccccccTTTccccccccccEEEETTTccHHHHHHHHHHHHTHHcHT############ DISOP:02AL 1-23,107-116| PSIPRED ccccccccccccccccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHcccccccHHHHHHHHHHHcccHHHHccccccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccHHHHHHHccEEEEEccccccHHHHHHHHHHHHcccEEEHHHHHHHHHcccHHHHHHHccHHHHHHHHHHHHHHHHHccccEEEEccccHHccHHHHHHHHHccEEEEEEccHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHccEEEEcccccHHHHHHHHHHHHHHHHHHHHHHcccHHccc //