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Rhodopseudomonas palustris BisB5 (rpal2)
Gene : ABE38194.1
DDBJ      :             DNA polymerase I
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  907/915 : Eukaryota  95/199 : Viruses  13/175   --->[See Alignment]
a.60.7c.120.1c.55.3e.8.1
:1033 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   31->239 1ut5B PDBj 3e-11 27.0 %
:BLT:PDB   422->1033 1d9dA PDBj e-134 45.5 %
:RPS:PDB   30->312 1bgxT PDBj 1e-60 35.0 %
:RPS:PDB   430->1032 2bdpA PDBj e-151 39.9 %
:RPS:SCOP  31->197 1exnA2  c.120.1.2 * 3e-40 22.1 %
:RPS:SCOP  201->302 1exnA1  a.60.7.1 * 2e-22 17.6 %
:RPS:SCOP  417->617 1d8yA1  c.55.3.5 * 9e-34 38.7 %
:RPS:SCOP  620->1033 1bgxT4  e.8.1.1 * e-139 47.6 %
:HMM:SCOP  29->198 1bgxT2 c.120.1.2 * 1.3e-56 47.2 %
:HMM:SCOP  198->302 1xo1A1 a.60.7.1 * 2.7e-33 48.6 %
:HMM:SCOP  416->619 1kfsA1 c.55.3.5 * 6.3e-47 37.6 %
:HMM:SCOP  621->1033 2hhvA2 e.8.1.1 * 1.9e-149 50.9 %
:RPS:PFM   30->197 PF02739 * 5_3_exonuc_N 2e-47 57.1 %
:RPS:PFM   199->293 PF01367 * 5_3_exonuc 4e-20 46.3 %
:RPS:PFM   424->615 PF01612 * 3_5_exonuc 6e-26 47.6 %
:RPS:PFM   673->1029 PF00476 * DNA_pol_A e-114 57.9 %
:HMM:PFM   648->1032 PF00476 * DNA_pol_A 5.1e-127 45.9 381/383  
:HMM:PFM   31->197 PF02739 * 5_3_exonuc_N 2.3e-53 42.6 162/169  
:HMM:PFM   199->298 PF01367 * 5_3_exonuc 5.2e-28 44.0 100/101  
:HMM:PFM   422->617 PF01612 * 3_5_exonuc 9.5e-22 34.3 172/174  
:BLT:SWISS 28->1033 DPO1_RHILE 0.0 61.4 %
:PROS 855->874|PS00447|DNA_POLYMERASE_A
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABE38194.1 GT:GENE ABE38194.1 GT:PRODUCT DNA polymerase I GT:DATABASE GIB00345CH01 GT:ORG rpal2 GB:ACCESSION GIB00345CH01 GB:LOCATION complement(1075040..1078141) GB:FROM 1075040 GB:TO 1078141 GB:DIRECTION - GB:PRODUCT DNA polymerase I GB:PROTEIN_ID ABE38194.1 GB:DB_XREF GI:91681892 InterPro:IPR000513 InterPro:IPR001098 InterPro:IPR002298 InterPro:IPR002421 InterPro:IPR002562 InterPro:IPR008918 LENGTH 1033 SQ:AASEQ MPKSPSKAAATPAAATSPAPIAGKAPGKGDHIFLVDGSSYIFRAYHALPPLSRKSDGLQVNAVLGFCNMLWKLLRDMPPDNRPTHLAIIFDKSEATFRNEMYPAYKAHRPPAPDDLIPQFALIREAVRAFDLPCLEQSGFEADDLIATYVREACEAGATATIVSSDKDLMQLVTDCVTMYDTMKDRRIGVAEVIEKFGVPPDKVVEVQALAGDSVDNVPGVPGIGIKTAAQLITEYGDLETLLARAGEIKQPKRREALIENAEKARISRKLVLLDDHVKLDVPLDELAVHEPDARKLISFLKAMEFTTLTRRVADYAQIDPSDVEAEAALKSSPLPLAGEVGARSATGGGTAASGDLFSEQVPSTQPSPASGRGSAQQSGEGGALNAGRGRDGRPGEVLSPQILAARRAETARKIPVDRTAYKTIRTLDELHGWIARIHDAGFVAVDAIATSIDPMQAELCGIALALAPNDAAYIPLGHRQTGDGSGLFAAGLAPDQLGAREALDALKPLLESAGLAKIGFNIKFTAVLLAQHGITLRNIDDLQLMSYALDAGRGSHGLDALSESNLGHTLHALGELTGSGKAKIGFDQVPIERATEYAGERADVALRLWRVLKPRLVAERMMAVYETLERPLVGVLARMERRGISIDRSVLSRLSADFAQTAARIEAEIRELAGEDINIGSPKQLGDILFGKMGLPGGSKTKTGAWSTSAQVLDELAEQGHEFPRKILDWRQVSKLRSTYTDALPNYVHPQTQRVHTTYALAATTTGRLSSNEPNLQNIPVRTEDGRKIRRAFIASPGYKLVSADYSQIELRLLSEVAEVPALRKAFQDGIDIHAMTASEMFGVPVEGMPSEIRRRAKAINFGIIYGISAFGLANQLGIPREEAGAYIKRYFERFPGIRAYMDETRDFCRAHGYVETLFGRKCHYPDIKASNPSIRAFNERAAINARLQGSAADIIRRAMGRMEDALAEKKLSAQMLLQVHDELIFEVPDDEVAATLPVVRHVMQDAPFPAVLLNVPLQVDARAADNWDEAH GT:EXON 1|1-1033:0| BL:SWS:NREP 1 BL:SWS:REP 28->1033|DPO1_RHILE|0.0|61.4|983/1016| PROS 855->874|PS00447|DNA_POLYMERASE_A|PDOC00412| SEG 2->25|pkspskaaatpaaatspapiagka| SEG 271->285|lvllddhvkldvpld| SEG 342->355|garsatgggtaasg| SEG 663->672|aarieaeire| BL:PDB:NREP 2 BL:PDB:REP 31->239|1ut5B|3e-11|27.0|196/272| BL:PDB:REP 422->1033|1d9dA|e-134|45.5|593/601| RP:PDB:NREP 2 RP:PDB:REP 30->312|1bgxT|1e-60|35.0|273/828| RP:PDB:REP 430->1032|2bdpA|e-151|39.9|572/580| RP:PFM:NREP 4 RP:PFM:REP 30->197|PF02739|2e-47|57.1|163/165|5_3_exonuc_N| RP:PFM:REP 199->293|PF01367|4e-20|46.3|95/100|5_3_exonuc| RP:PFM:REP 424->615|PF01612|6e-26|47.6|166/171|3_5_exonuc| RP:PFM:REP 673->1029|PF00476|e-114|57.9|349/360|DNA_pol_A| HM:PFM:NREP 4 HM:PFM:REP 648->1032|PF00476|5.1e-127|45.9|381/383|DNA_pol_A| HM:PFM:REP 31->197|PF02739|2.3e-53|42.6|162/169|5_3_exonuc_N| HM:PFM:REP 199->298|PF01367|5.2e-28|44.0|100/101|5_3_exonuc| HM:PFM:REP 422->617|PF01612|9.5e-22|34.3|172/174|3_5_exonuc| GO:PFM:NREP 11 GO:PFM GO:0003677|"GO:DNA binding"|PF02739|IPR020046| GO:PFM GO:0008409|"GO:5'-3' exonuclease activity"|PF02739|IPR020046| GO:PFM GO:0003677|"GO:DNA binding"|PF01367|IPR020047| GO:PFM GO:0008409|"GO:5'-3' exonuclease activity"|PF01367|IPR020047| GO:PFM GO:0003676|"GO:nucleic acid binding"|PF01612|IPR002562| GO:PFM GO:0005622|"GO:intracellular"|PF01612|IPR002562| GO:PFM GO:0006139|"GO:nucleobase, nucleoside, nucleotide and nucleic acid metabolic process"|PF01612|IPR002562| GO:PFM GO:0008408|"GO:3'-5' exonuclease activity"|PF01612|IPR002562| GO:PFM GO:0003677|"GO:DNA binding"|PF00476|IPR001098| GO:PFM GO:0003887|"GO:DNA-directed DNA polymerase activity"|PF00476|IPR001098| GO:PFM GO:0006260|"GO:DNA replication"|PF00476|IPR001098| RP:SCP:NREP 4 RP:SCP:REP 31->197|1exnA2|3e-40|22.1|154/166|c.120.1.2| RP:SCP:REP 201->302|1exnA1|2e-22|17.6|102/105|a.60.7.1| RP:SCP:REP 417->617|1d8yA1|9e-34|38.7|191/195|c.55.3.5| RP:SCP:REP 620->1033|1bgxT4|e-139|47.6|403/406|e.8.1.1| HM:SCP:REP 29->198|1bgxT2|1.3e-56|47.2|163/173|c.120.1.2|1/1|PIN domain-like| HM:SCP:REP 198->302|1xo1A1|2.7e-33|48.6|105/0|a.60.7.1|1/1|5' to 3' exonuclease, C-terminal subdomain| HM:SCP:REP 416->619|1kfsA1|6.3e-47|37.6|194/0|c.55.3.5|1/1|Ribonuclease H-like| HM:SCP:REP 621->1033|2hhvA2|1.9e-149|50.9|407/0|e.8.1.1|1/1|DNA/RNA polymerases| OP:NHOMO 1489 OP:NHOMOORG 1015 OP:PATTERN -------------------------------------------------------------------- 1221211111111122222-22112222222222222222212222121111222111112231222222111111111111222222111111111--1111111111111111111111111111111111111111111111112111111111111111111111111111111111112111111112222222332222222222222222321132142222222222222222222222222222111111112111111121111111111211111111111111111111111211111111111111111111112111111111111221111112112212122212111111111111111111111111111111111111111111111111-111131111111111111111111121111111111111111111111111111111111111111111111111111111111111111111111111111111111111111-1121111111111121111112112211111111111111111111111111111111111222111222122122111111111111111111111111111112221122112222222222222222222221-1111211111122222222221222222-22222222222222222222222222222222222222222222222222221222222222222111111111111111112111111111111111111111111111111111111111111111111111111222222222222222222222222111111111111111111111111111112-11211111111211111111111111111111 22--431-C66---1---------------------------------------------------------------------------------------------52511222-2122221572516E2-425121221221121-221-71131212112212111311212244K4444254A7-552332111 -------1----------------------------------------------11-----------1---------------------11-----1-----------------1------1----------------1----------1-1--------2-------------- STR:NPRED 908 STR:RPRED 87.9 SQ:SECSTR ############################ccEEEEEETTHHHHHHHTccTTcTccTTccccHHHHHHHHHHHHHHHHccHHccTcEEEEEcccccccTTGGGGcTTTcccccccccHHHHHHHHHHHHHHTTcEEEccTTccHHHHHHHHHHHHHHTTEEEEEEcccGGGGGccccccEEEccTcccEEcHHHHHHcccccGGGHHHHHHTTcccccccccccccTTcTTTTTGGGGGTTcccccccccccTHTTTHHHHTcTTTTTTGGGGGcccccccccccccccccccccHHHHHHHHHHTTcGGGTTccc#################################################################################################cccccccccccEEcccccEEcccccGGGGccEEEEEEEccccccTTccccEEEEEETTEEEEEcHHHHTTTTHHHcccEEEcccccccHHEEcHHHHHHHHcTTcEEEEccHHHHHHHHHTTTcccccEEEHHHHHHHHcGGGccccHHHHHHTTTccccccHHHHHccGGGcccccHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHTTcHHHHHHTHHHHHHHHHHHHHHcEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHTccccTTcHHHHHHHHHTTcccccccEETTEHEcccHHHHHHHGGGGcHHHHHHHHHHHHHHHHHHHTHHHHHHccTTTcEEccEEEcccccccccEEEcccTTccccccHHHHGGGGGEEcccTEEEEEEEEccHHHHHHHHHHTcHHHHHHHHTTccHHHHHHHHHTTccGGGccHHHHHHHHHHHHHHHHcccHHHHHHHHTccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHcEEEcTTccEEEcGGGGcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTcccEEEEEcccEEEEEEEGGGHHHHHHHHHHHHHHHHHHcccccccccEEEEEEccTTTcc DISOP:02AL 1-25,317-334,336-350,404-415,1033-1034| PSIPRED cccccccccccccccccccccccccccccccEEEEEccHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHcccccccEEEEEEEcccccHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHcccEEEEccccHHHHHHHHHHHHHHccccEEEEcccHHHHHHccccEEEEEccccEEEcHHHHHHHccccHHHHHHHHHHcccccccccccccccHHHHHHHHHHHccHHHHHHHHHHcccHHHHHHHHccHHHHHHHHHHEEEcccccccccHHHHccccccHHHHHHHHHHcccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccEEEccHHHHHHHHHHHHccccEEEEEEEcccccccccEEEEEEEEccccEEEEEcccccccccccccccccccccccHHHHHHHHHHHHcccccEEEEEcccHHHHHHHHcccccccccHHHHHHHHHccccccccHHHHHHHHcccccccHHHHHccccccccHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHccHHHHHHHHHHHccEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEccEEEEcccccccccccccccccccccccccHHHHccEEcccccEEEEEEccHHHHHHHHHHHccHHHHHHHHccccHHHHHHHHHccccHHHccHHHHHHHHHHHHHHHcccccHHHHHHHcccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHcccEEcccccEEEccccccccHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEccEEEEEccHHHHHHHHHHHHHHHHHccccEEEccccEEEEEEEEccHHHHc //