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Rhodopseudomonas palustris BisB5 (rpal2)
Gene : ABE38226.1
DDBJ      :             methylitaconate delta2-delta3-isomerase
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  211/915 : Eukaryota  44/199 : Viruses  0/175   --->[See Alignment]
d.21.1
:387 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   17->250 3g7kB PDBj 4e-49 42.3 %
:RPS:PDB   50->368 3ednA PDBj 5e-19 12.1 %
:RPS:SCOP  17->183 2h9fA1  d.21.1.4 * 6e-64 41.9 %
:RPS:SCOP  189->373 2h9fA2  d.21.1.4 * 3e-39 26.2 %
:HMM:SCOP  54->223 1tm0A_ d.21.1.3 * 0.0002 23.1 %
:RPS:PFM   20->368 PF04303 * PrpF 4e-59 46.7 %
:HMM:PFM   18->369 PF04303 * PrpF 3.5e-114 46.7 349/371  
:BLT:SWISS 20->339 YBHH_SHIFL 4e-81 47.5 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABE38226.1 GT:GENE ABE38226.1 GT:PRODUCT methylitaconate delta2-delta3-isomerase GT:DATABASE GIB00345CH01 GT:ORG rpal2 GB:ACCESSION GIB00345CH01 GB:LOCATION complement(1114980..1116143) GB:FROM 1114980 GB:TO 1116143 GB:DIRECTION - GB:PRODUCT methylitaconate delta2-delta3-isomerase GB:PROTEIN_ID ABE38226.1 GB:DB_XREF GI:91681924 InterPro:IPR007400 LENGTH 387 SQ:AASEQ MPPPQWMQQIPGRKRMQTAIPCLFMRGGTSRGPFFNAADLPGDIATRDKVLLAVMGSPDRRQIDGLGGAHPLTSKVGIVSKGSRPGVDLDFLFAQLQPDKDSVDTTPNCGNMLAAVAPFALETGLVKPQGDATTLRVLTLNTDMQCDITVQTPGGHVAYEGDARIDGAPGTSAPIKINFLDTAGSVAPSLLPTGHVRDVIDGVEVTCIDNGMPLVMFKAEAVGRTGYEDIAQLNADTELKARLERLRIACGHAMQLGDVTAKNYPKMTLIAPPRAGGSIATRSFIPHVCHDAIGVLAAVTVATACVLKGSVTQGIAQPPGGTIKQISVEHPTGEFSVEIEVDPANPQNVTRAALLRTARLLMRGEAMVPASVWRGKQTTAPAQRRAG GT:EXON 1|1-387:0| BL:SWS:NREP 1 BL:SWS:REP 20->339|YBHH_SHIFL|4e-81|47.5|318/350| TM:NTM 1 TM:REGION 289->311| SEG 295->307|vlaavtvatacvl| SEG 350->361|traallrtarll| BL:PDB:NREP 1 BL:PDB:REP 17->250|3g7kB|4e-49|42.3|234/387| RP:PDB:NREP 1 RP:PDB:REP 50->368|3ednA|5e-19|12.1|264/289| RP:PFM:NREP 1 RP:PFM:REP 20->368|PF04303|4e-59|46.7|347/371|PrpF| HM:PFM:NREP 1 HM:PFM:REP 18->369|PF04303|3.5e-114|46.7|349/371|PrpF| RP:SCP:NREP 2 RP:SCP:REP 17->183|2h9fA1|6e-64|41.9|167/182|d.21.1.4| RP:SCP:REP 189->373|2h9fA2|3e-39|26.2|183/209|d.21.1.4| HM:SCP:REP 54->223|1tm0A_|0.0002|23.1|143/332|d.21.1.3|1/1|Diaminopimelate epimerase-like| OP:NHOMO 326 OP:NHOMOORG 255 OP:PATTERN -------------------------------------------------------------------- --------------------------------------12-1----------121-----------11-----------------------------------------------------------------------------------------------------------------------------1--------1------1---11----------------------------------------------------------------------------------------------------------------------------------------------------1------------1----------2-----1-111-------------------111--211---11---11---------22-----------1----1---------------------------------11--122211111111111111121111-11111122--1111--11221-12-------21-111111----1-1-------------------------------1-----------------------------111112111111111111111111111----1--------1---1--1111111111-11111111--111--11-1121---------------------1-1-111------------------1----------1-22---1-----------11111111112-11211312132431111-----11-------111111111121222222221111----------------------------------------------------------- --------------1232111114332------1111111111-----13223222221---1--------------------------131311-------3-------------------------------------------------------------------------------------11--------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 354 STR:RPRED 91.5 SQ:SECSTR ##############HcccEEEEEEEEETTEEEEEEEEEcTTcccccccHEEcccTTccHHHHcccHHHHHHccccEEEEEccccTTccEEEEEccEETTccccccEcccHHHHHHHHHHHHHTTccccccEEEEccEEETTEEEEEEEEEEETTEEEEEEEEEcTTccEEEEEccccEEEEccccHHHHHHHTTccGGGccTcccEEEEcccEEEEEEcccHcccccGHHHHHcccGGGHHHHccccTTcEccccGGGGGGcccEEEEEcccccTTccEEcEEccTTccccEETEEcEcccHHHHHHHHHHHHHTccccccEEEEcGGGTccEEEEEEEEEEccTTccccEEEEEEcEEEEEEEEEEc################### DISOP:02AL 1-3,318-319,321-323,381-388| PSIPRED cccHHHHHHccccccccccccEEEEEccccccEEEcHHHccccHHHHHHHHHHHHccccHHHccccccccccccEEEEEcccccccccEEEEEEEEEccccEEEccccHHHHHHHHHHHHHHcccccccccEEEEEEEEcccccEEEEEEEccccEEEEEccEEEcccccccccEEEEEEcccccccccccccccEEcEEccEEEEEEEccccEEEEEHHHccccccccHHHHcccHHHHHHHHHHHHHHHHHccccccccccccEEEEEEccccccEEEEEEEccccccHHHHHHHHHHHHcccccccHHHHHHHHcccccccEEEEEcccEEEEEEEEEcccccccEEHHHHHHHHHHHHcccEEccHHHcccccccHHHHHHcc //